Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.04■□□□□ 0.32
CDX2Q99626 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.04■□□□□ 0.32
CDX2Q99626 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDX2Q99626 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
CDX2Q99626 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX2Q99626 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX2Q99626 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX2Q99626 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDX2Q99626 MTX1P1-201ENST00000440904 838 ntBASIC17.04■□□□□ 0.32
CDX2Q99626 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC17.04■□□□□ 0.32
CDX2Q99626 AP001063.1-201ENST00000568332 529 ntBASIC17.04■□□□□ 0.32
CDX2Q99626 GNRHR2-203ENST00000581100 1187 ntBASIC17.04■□□□□ 0.32
CDX2Q99626 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDX2Q99626 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CDX2Q99626 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX2Q99626 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX2Q99626 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX2Q99626 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CDX2Q99626 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
CDX2Q99626 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CDX2Q99626 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.03■□□□□ 0.32
CDX2Q99626 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CDX2Q99626 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX2Q99626 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX2Q99626 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.03■□□□□ 0.32
CDX2Q99626 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX2Q99626 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX2Q99626 C1QBPP1-201ENST00000400117 770 ntBASIC17.03■□□□□ 0.32
CDX2Q99626 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CDX2Q99626 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CDX2Q99626 AL133466.1-201ENST00000447582 150 ntBASIC17.03■□□□□ 0.32
CDX2Q99626 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC17.03■□□□□ 0.32
CDX2Q99626 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC17.03■□□□□ 0.32
CDX2Q99626 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.03■□□□□ 0.32
CDX2Q99626 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX2Q99626 ACR-203ENST00000529621 708 ntTSL 5 BASIC17.03■□□□□ 0.32
CDX2Q99626 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
CDX2Q99626 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
CDX2Q99626 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX2Q99626 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CDX2Q99626 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CDX2Q99626 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX2Q99626 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.03■□□□□ 0.32
CDX2Q99626 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX2Q99626 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.03■□□□□ 0.32
CDX2Q99626 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX2Q99626 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX2Q99626 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CDX2Q99626 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CDX2Q99626 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX2Q99626 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
CDX2Q99626 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDX2Q99626 FRMD8P1-201ENST00000440433 1524 ntBASIC17.02■□□□□ 0.32
CDX2Q99626 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC17.02■□□□□ 0.32
CDX2Q99626 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDX2Q99626 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDX2Q99626 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.02■□□□□ 0.32
CDX2Q99626 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDX2Q99626 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDX2Q99626 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC17.02■□□□□ 0.32
CDX2Q99626 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDX2Q99626 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC17.02■□□□□ 0.32
CDX2Q99626 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.02■□□□□ 0.32
CDX2Q99626 RPSAP36-202ENST00000494591 1261 ntBASIC17.02■□□□□ 0.32
CDX2Q99626 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.02■□□□□ 0.32
CDX2Q99626 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC17.02■□□□□ 0.32
CDX2Q99626 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC17.02■□□□□ 0.32
CDX2Q99626 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CDX2Q99626 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.02■□□□□ 0.32
CDX2Q99626 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
CDX2Q99626 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDX2Q99626 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDX2Q99626 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDX2Q99626 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDX2Q99626 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDX2Q99626 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDX2Q99626 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDX2Q99626 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CDX2Q99626 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.01■□□□□ 0.31
CDX2Q99626 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CDX2Q99626 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 AC006001.1-201ENST00000325130 474 ntBASIC17.01■□□□□ 0.31
CDX2Q99626 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.01■□□□□ 0.31
CDX2Q99626 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CDX2Q99626 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CDX2Q99626 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDX2Q99626 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.01■□□□□ 0.31
CDX2Q99626 CYP46A4P-201ENST00000414953 267 ntBASIC17.01■□□□□ 0.31
CDX2Q99626 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC17.01■□□□□ 0.31
CDX2Q99626 RPL13AP25-201ENST00000484130 612 ntBASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms