Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AL135744.1-201ENST00000565098 629 ntBASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SH3RF1Q7Z6J0 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 IGHV3-42-201ENST00000520410 361 ntBASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 AC140878.1-201ENST00000565277 250 ntBASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 ALOX12P2-203ENST00000570921 1945 ntBASIC18.94■□□□□ 0.62
SH3RF1Q7Z6J0 TOP3BP1-201ENST00000420768 1380 ntBASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 CYP2T1P-202ENST00000641596 2535 ntBASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SH3RF1Q7Z6J0 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 SPCS2P4-201ENST00000436160 681 ntBASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 AC087163.2-201ENST00000457299 853 ntBASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 RN7SL589P-201ENST00000481268 310 ntBASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 AC026150.2-201ENST00000564693 1156 ntBASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 MIR4492-201ENST00000581627 80 ntBASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.92■□□□□ 0.62
SH3RF1Q7Z6J0 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms