Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
PKNOX1P55347 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.33■□□□□ 0.2
PKNOX1P55347 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.33■□□□□ 0.2
PKNOX1P55347 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.33■□□□□ 0.2
PKNOX1P55347 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.33■□□□□ 0.2
PKNOX1P55347 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.33■□□□□ 0.2
PKNOX1P55347 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.33■□□□□ 0.2
PKNOX1P55347 AC004706.3-202ENST00000621574 984 ntBASIC16.33■□□□□ 0.2
PKNOX1P55347 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.33■□□□□ 0.2
PKNOX1P55347 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.33■□□□□ 0.2
PKNOX1P55347 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.33■□□□□ 0.2
PKNOX1P55347 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PKNOX1P55347 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PKNOX1P55347 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PKNOX1P55347 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.32■□□□□ 0.2
PKNOX1P55347 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
PKNOX1P55347 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.32■□□□□ 0.2
PKNOX1P55347 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.32■□□□□ 0.2
PKNOX1P55347 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 GGT3P-204ENST00000453783 1664 ntBASIC16.32■□□□□ 0.2
PKNOX1P55347 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.32■□□□□ 0.2
PKNOX1P55347 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 KRT18P31-201ENST00000506277 1292 ntBASIC16.32■□□□□ 0.2
PKNOX1P55347 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PKNOX1P55347 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.32■□□□□ 0.2
PKNOX1P55347 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.32■□□□□ 0.2
PKNOX1P55347 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.32■□□□□ 0.2
PKNOX1P55347 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.32■□□□□ 0.2
PKNOX1P55347 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PKNOX1P55347 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.32■□□□□ 0.2
PKNOX1P55347 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PKNOX1P55347 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.32■□□□□ 0.2
PKNOX1P55347 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.32■□□□□ 0.2
PKNOX1P55347 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PKNOX1P55347 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.32■□□□□ 0.2
PKNOX1P55347 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PKNOX1P55347 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PKNOX1P55347 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.31■□□□□ 0.2
PKNOX1P55347 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PKNOX1P55347 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
PKNOX1P55347 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
PKNOX1P55347 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 FGFR3P6-201ENST00000457012 610 ntBASIC16.31■□□□□ 0.2
PKNOX1P55347 AC087163.2-201ENST00000457299 853 ntBASIC16.31■□□□□ 0.2
PKNOX1P55347 SCARNA2-201ENST00000458748 420 ntBASIC16.31■□□□□ 0.2
PKNOX1P55347 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 SART3-203ENST00000546611 1184 ntBASIC16.31■□□□□ 0.2
PKNOX1P55347 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.31■□□□□ 0.2
PKNOX1P55347 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.31■□□□□ 0.2
PKNOX1P55347 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.31■□□□□ 0.2
PKNOX1P55347 AC091167.2-201ENST00000579581 588 ntBASIC16.31■□□□□ 0.2
PKNOX1P55347 MIR4492-201ENST00000581627 80 ntBASIC16.31■□□□□ 0.2
PKNOX1P55347 MPDU1-223ENST00000582151 728 ntBASIC16.31■□□□□ 0.2
PKNOX1P55347 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.31■□□□□ 0.2
PKNOX1P55347 MTDHP4-201ENST00000600287 670 ntBASIC16.31■□□□□ 0.2
PKNOX1P55347 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.31■□□□□ 0.2
PKNOX1P55347 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
PKNOX1P55347 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.31■□□□□ 0.2
PKNOX1P55347 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms