Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
MRE11P49959 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MRE11P49959 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MRE11P49959 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MRE11P49959 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.4■□□□□ 0.7
MRE11P49959 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC19.4■□□□□ 0.7
MRE11P49959 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
MRE11P49959 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MRE11P49959 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MRE11P49959 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.4■□□□□ 0.7
MRE11P49959 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.4■□□□□ 0.7
MRE11P49959 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.4■□□□□ 0.7
MRE11P49959 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.4■□□□□ 0.7
MRE11P49959 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
MRE11P49959 TERC-201ENST00000602385 541 ntBASIC19.4■□□□□ 0.7
MRE11P49959 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.4■□□□□ 0.7
MRE11P49959 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
MRE11P49959 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
MRE11P49959 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
MRE11P49959 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MRE11P49959 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
MRE11P49959 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.4■□□□□ 0.7
MRE11P49959 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC19.4■□□□□ 0.7
MRE11P49959 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MRE11P49959 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
MRE11P49959 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MRE11P49959 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
MRE11P49959 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
MRE11P49959 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
MRE11P49959 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
MRE11P49959 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC19.39■□□□□ 0.7
MRE11P49959 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
MRE11P49959 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.39■□□□□ 0.7
MRE11P49959 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
MRE11P49959 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
MRE11P49959 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MRE11P49959 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
MRE11P49959 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
MRE11P49959 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.39■□□□□ 0.69
MRE11P49959 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.39■□□□□ 0.69
MRE11P49959 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MRE11P49959 KRT18P31-201ENST00000506277 1292 ntBASIC19.39■□□□□ 0.69
MRE11P49959 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.39■□□□□ 0.69
MRE11P49959 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.39■□□□□ 0.69
MRE11P49959 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MRE11P49959 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
MRE11P49959 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
MRE11P49959 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.39■□□□□ 0.69
MRE11P49959 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.39■□□□□ 0.69
MRE11P49959 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
MRE11P49959 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
MRE11P49959 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MRE11P49959 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MRE11P49959 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MRE11P49959 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MRE11P49959 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MRE11P49959 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MRE11P49959 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
MRE11P49959 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
MRE11P49959 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
MRE11P49959 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
MRE11P49959 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MRE11P49959 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MRE11P49959 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MRE11P49959 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MRE11P49959 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
MRE11P49959 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.38■□□□□ 0.69
MRE11P49959 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC19.38■□□□□ 0.69
MRE11P49959 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MRE11P49959 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.38■□□□□ 0.69
MRE11P49959 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
MRE11P49959 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
MRE11P49959 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MRE11P49959 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MRE11P49959 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.38■□□□□ 0.69
MRE11P49959 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.38■□□□□ 0.69
MRE11P49959 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.38■□□□□ 0.69
MRE11P49959 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.38■□□□□ 0.69
MRE11P49959 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.38■□□□□ 0.69
MRE11P49959 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
MRE11P49959 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC19.38■□□□□ 0.69
MRE11P49959 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MRE11P49959 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MRE11P49959 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MRE11P49959 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
MRE11P49959 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC19.38■□□□□ 0.69
MRE11P49959 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MRE11P49959 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC19.37■□□□□ 0.69
MRE11P49959 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MRE11P49959 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC19.37■□□□□ 0.69
MRE11P49959 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MRE11P49959 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.37■□□□□ 0.69
MRE11P49959 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.37■□□□□ 0.69
MRE11P49959 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MRE11P49959 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
MRE11P49959 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.37■□□□□ 0.69
MRE11P49959 SNX18-202ENST00000343017 3140 ntBASIC19.37■□□□□ 0.69
MRE11P49959 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MRE11P49959 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC19.37■□□□□ 0.69
MRE11P49959 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms