Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.75■□□□□ 0.27
VIMP08670 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 AC009336.1-201ENST00000608941 1553 ntBASIC16.75■□□□□ 0.27
VIMP08670 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.75■□□□□ 0.27
VIMP08670 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.75■□□□□ 0.27
VIMP08670 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
VIMP08670 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC16.75■□□□□ 0.27
VIMP08670 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VIMP08670 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
VIMP08670 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 GGT3P-204ENST00000453783 1664 ntBASIC16.75■□□□□ 0.27
VIMP08670 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VIMP08670 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.75■□□□□ 0.27
VIMP08670 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.75■□□□□ 0.27
VIMP08670 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VIMP08670 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.74■□□□□ 0.27
VIMP08670 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
VIMP08670 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.74■□□□□ 0.27
VIMP08670 AC122714.2-201ENST00000502787 707 ntBASIC16.74■□□□□ 0.27
VIMP08670 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.74■□□□□ 0.27
VIMP08670 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.74■□□□□ 0.27
VIMP08670 AC073912.3-201ENST00000624414 853 ntBASIC16.74■□□□□ 0.27
VIMP08670 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.74■□□□□ 0.27
VIMP08670 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
VIMP08670 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.74■□□□□ 0.27
VIMP08670 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
VIMP08670 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VIMP08670 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC16.74■□□□□ 0.27
VIMP08670 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.74■□□□□ 0.27
VIMP08670 AC097376.2-205ENST00000610159 5334 ntBASIC16.74■□□□□ 0.27
VIMP08670 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.74■□□□□ 0.27
VIMP08670 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.74■□□□□ 0.27
VIMP08670 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VIMP08670 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.74■□□□□ 0.27
VIMP08670 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.73■□□□□ 0.27
VIMP08670 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.73■□□□□ 0.27
VIMP08670 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
VIMP08670 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC16.73■□□□□ 0.27
VIMP08670 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
VIMP08670 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
VIMP08670 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.73■□□□□ 0.27
VIMP08670 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.73■□□□□ 0.27
VIMP08670 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.73■□□□□ 0.27
VIMP08670 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.73■□□□□ 0.27
VIMP08670 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.73■□□□□ 0.27
VIMP08670 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.73■□□□□ 0.27
VIMP08670 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.73■□□□□ 0.27
VIMP08670 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.73■□□□□ 0.27
VIMP08670 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.73■□□□□ 0.27
VIMP08670 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.73■□□□□ 0.27
VIMP08670 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
VIMP08670 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.73■□□□□ 0.27
VIMP08670 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VIMP08670 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.73■□□□□ 0.27
VIMP08670 AC023157.3-201ENST00000619086 2088 ntBASIC16.73■□□□□ 0.27
VIMP08670 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.73■□□□□ 0.27
VIMP08670 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.73■□□□□ 0.27
VIMP08670 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms