Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 SNX29P1-201ENST00000548357 1007 ntBASIC21■□□□□ 0.95
SCN11AQ9UI33 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC21■□□□□ 0.95
SCN11AQ9UI33 APOC4-201ENST00000591600 348 ntTSL 3 BASIC21■□□□□ 0.95
SCN11AQ9UI33 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SCN11AQ9UI33 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SCN11AQ9UI33 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.99■□□□□ 0.95
SCN11AQ9UI33 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN11AQ9UI33 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN11AQ9UI33 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN11AQ9UI33 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN11AQ9UI33 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SCN11AQ9UI33 TTTY23B-201ENST00000442790 549 ntBASIC20.99■□□□□ 0.95
SCN11AQ9UI33 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC20.99■□□□□ 0.95
SCN11AQ9UI33 CTBP2P3-201ENST00000585629 1255 ntBASIC20.99■□□□□ 0.95
SCN11AQ9UI33 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN11AQ9UI33 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN11AQ9UI33 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC20.99■□□□□ 0.95
SCN11AQ9UI33 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SCN11AQ9UI33 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 SDHAP3-202ENST00000515467 728 ntBASIC20.98■□□□□ 0.95
SCN11AQ9UI33 RPSAP52-203ENST00000622976 1023 ntBASIC20.98■□□□□ 0.95
SCN11AQ9UI33 AL158212.4-201ENST00000624062 1286 ntBASIC20.98■□□□□ 0.95
SCN11AQ9UI33 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 GRN-214ENST00000589265 1632 ntTSL 5 BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.98■□□□□ 0.95
SCN11AQ9UI33 AC098614.1-201ENST00000368528 745 ntBASIC20.97■□□□□ 0.95
SCN11AQ9UI33 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 PAM16-215ENST00000577031 548 ntTSL 4 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 CLK3P2-201ENST00000427566 1453 ntBASIC20.97■□□□□ 0.95
SCN11AQ9UI33 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC20.97■□□□□ 0.95
SCN11AQ9UI33 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 WFDC1-204ENST00000613603 549 ntBASIC20.96■□□□□ 0.95
SCN11AQ9UI33 MIR6752-201ENST00000618442 71 ntBASIC20.96■□□□□ 0.95
SCN11AQ9UI33 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC20.96■□□□□ 0.95
SCN11AQ9UI33 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC20.95■□□□□ 0.94
SCN11AQ9UI33 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms