Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.81■□□□□ 0.44
CNTN3Q9P232 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
CNTN3Q9P232 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 TUBB3P1-201ENST00000405796 1332 ntBASIC17.8■□□□□ 0.44
CNTN3Q9P232 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.8■□□□□ 0.44
CNTN3Q9P232 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.8■□□□□ 0.44
CNTN3Q9P232 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.8■□□□□ 0.44
CNTN3Q9P232 SPTSSB-204ENST00000617024 1292 ntBASIC17.8■□□□□ 0.44
CNTN3Q9P232 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.8■□□□□ 0.44
CNTN3Q9P232 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.8■□□□□ 0.44
CNTN3Q9P232 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.8■□□□□ 0.44
CNTN3Q9P232 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.8■□□□□ 0.44
CNTN3Q9P232 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.8■□□□□ 0.44
CNTN3Q9P232 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 GGT3P-204ENST00000453783 1664 ntBASIC17.8■□□□□ 0.44
CNTN3Q9P232 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.8■□□□□ 0.44
CNTN3Q9P232 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.8■□□□□ 0.44
CNTN3Q9P232 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.8■□□□□ 0.44
CNTN3Q9P232 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CNTN3Q9P232 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CNTN3Q9P232 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CNTN3Q9P232 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CNTN3Q9P232 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CNTN3Q9P232 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CNTN3Q9P232 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.79■□□□□ 0.44
CNTN3Q9P232 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CNTN3Q9P232 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CNTN3Q9P232 FAM220BP-201ENST00000377689 816 ntBASIC17.79■□□□□ 0.44
CNTN3Q9P232 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CNTN3Q9P232 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.79■□□□□ 0.44
CNTN3Q9P232 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.79■□□□□ 0.44
CNTN3Q9P232 AC098859.1-201ENST00000502915 1238 ntBASIC17.79■□□□□ 0.44
CNTN3Q9P232 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.79■□□□□ 0.44
CNTN3Q9P232 MIR6080-201ENST00000617359 66 ntBASIC17.79■□□□□ 0.44
CNTN3Q9P232 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CNTN3Q9P232 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CNTN3Q9P232 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CNTN3Q9P232 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CNTN3Q9P232 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
CNTN3Q9P232 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CNTN3Q9P232 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CNTN3Q9P232 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.79■□□□□ 0.44
CNTN3Q9P232 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.78■□□□□ 0.44
CNTN3Q9P232 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 HLA-H-201ENST00000383620 1096 ntBASIC17.78■□□□□ 0.44
CNTN3Q9P232 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 KLF2P3-201ENST00000451977 1087 ntBASIC17.78■□□□□ 0.44
CNTN3Q9P232 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CNTN3Q9P232 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CNTN3Q9P232 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CNTN3Q9P232 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CNTN3Q9P232 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
CNTN3Q9P232 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
CNTN3Q9P232 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CNTN3Q9P232 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CNTN3Q9P232 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CNTN3Q9P232 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CNTN3Q9P232 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms