Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.9■□□□□ 0.62
ERCC4Q92889 PRYP5-201ENST00000451909 266 ntBASIC18.9■□□□□ 0.62
ERCC4Q92889 SART3-203ENST00000546611 1184 ntBASIC18.9■□□□□ 0.62
ERCC4Q92889 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.9■□□□□ 0.62
ERCC4Q92889 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 AL512652.2-201ENST00000625156 1716 ntBASIC18.9■□□□□ 0.62
ERCC4Q92889 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.9■□□□□ 0.62
ERCC4Q92889 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
ERCC4Q92889 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.9■□□□□ 0.62
ERCC4Q92889 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.9■□□□□ 0.62
ERCC4Q92889 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ERCC4Q92889 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
ERCC4Q92889 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
ERCC4Q92889 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
ERCC4Q92889 AC105917.1-201ENST00000506637 2539 ntBASIC18.89■□□□□ 0.61
ERCC4Q92889 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
ERCC4Q92889 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.89■□□□□ 0.61
ERCC4Q92889 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.89■□□□□ 0.61
ERCC4Q92889 HLA-J-202ENST00000469281 1241 ntBASIC18.89■□□□□ 0.61
ERCC4Q92889 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.89■□□□□ 0.61
ERCC4Q92889 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
ERCC4Q92889 MTDHP3-201ENST00000594186 672 ntBASIC18.89■□□□□ 0.61
ERCC4Q92889 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
ERCC4Q92889 AL022326.1-202ENST00000641533 845 ntBASIC18.89■□□□□ 0.61
ERCC4Q92889 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
ERCC4Q92889 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
ERCC4Q92889 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.89■□□□□ 0.61
ERCC4Q92889 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.89■□□□□ 0.61
ERCC4Q92889 NCF1C-201ENST00000438382 1427 ntBASIC18.89■□□□□ 0.61
ERCC4Q92889 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.89■□□□□ 0.61
ERCC4Q92889 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.89■□□□□ 0.61
ERCC4Q92889 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.89■□□□□ 0.61
ERCC4Q92889 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
ERCC4Q92889 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ERCC4Q92889 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
ERCC4Q92889 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC18.88■□□□□ 0.61
ERCC4Q92889 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
ERCC4Q92889 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.88■□□□□ 0.61
ERCC4Q92889 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.88■□□□□ 0.61
ERCC4Q92889 AC013467.2-201ENST00000605472 835 ntBASIC18.88■□□□□ 0.61
ERCC4Q92889 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.88■□□□□ 0.61
ERCC4Q92889 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
ERCC4Q92889 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
ERCC4Q92889 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.88■□□□□ 0.61
ERCC4Q92889 AL596087.1-201ENST00000400979 1969 ntBASIC18.88■□□□□ 0.61
ERCC4Q92889 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.88■□□□□ 0.61
ERCC4Q92889 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ERCC4Q92889 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC4Q92889 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
ERCC4Q92889 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
ERCC4Q92889 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC4Q92889 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.87■□□□□ 0.61
ERCC4Q92889 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC4Q92889 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC4Q92889 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC4Q92889 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
ERCC4Q92889 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC4Q92889 GGT3P-204ENST00000453783 1664 ntBASIC18.87■□□□□ 0.61
ERCC4Q92889 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.87■□□□□ 0.61
ERCC4Q92889 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms