Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RTF1Q92541 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
RTF1Q92541 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC21.6■■□□□ 1.05
RTF1Q92541 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.6■■□□□ 1.05
RTF1Q92541 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
RTF1Q92541 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
RTF1Q92541 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
RTF1Q92541 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RTF1Q92541 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RTF1Q92541 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RTF1Q92541 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
RTF1Q92541 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
RTF1Q92541 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RTF1Q92541 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
RTF1Q92541 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RTF1Q92541 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC21.59■■□□□ 1.05
RTF1Q92541 VMO1-203ENST00000416307 712 ntTSL 2 BASIC21.59■■□□□ 1.05
RTF1Q92541 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC21.59■■□□□ 1.05
RTF1Q92541 HLA-J-202ENST00000469281 1241 ntBASIC21.59■■□□□ 1.05
RTF1Q92541 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC21.59■■□□□ 1.05
RTF1Q92541 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC21.59■■□□□ 1.05
RTF1Q92541 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC21.59■■□□□ 1.05
RTF1Q92541 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC21.59■■□□□ 1.05
RTF1Q92541 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC21.59■■□□□ 1.05
RTF1Q92541 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC21.59■■□□□ 1.05
RTF1Q92541 AL390955.2-201ENST00000603032 514 ntBASIC21.59■■□□□ 1.05
RTF1Q92541 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RTF1Q92541 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
RTF1Q92541 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RTF1Q92541 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC21.59■■□□□ 1.05
RTF1Q92541 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RTF1Q92541 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RTF1Q92541 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
RTF1Q92541 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
RTF1Q92541 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC21.58■■□□□ 1.05
RTF1Q92541 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RTF1Q92541 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
RTF1Q92541 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC21.58■■□□□ 1.05
RTF1Q92541 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
RTF1Q92541 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
RTF1Q92541 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC21.58■■□□□ 1.05
RTF1Q92541 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC21.58■■□□□ 1.05
RTF1Q92541 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RTF1Q92541 HLA-H-201ENST00000383620 1096 ntBASIC21.58■■□□□ 1.05
RTF1Q92541 WDR53-203ENST00000429115 683 ntTSL 2 BASIC21.58■■□□□ 1.05
RTF1Q92541 AC055876.3-201ENST00000431496 288 ntBASIC21.58■■□□□ 1.05
RTF1Q92541 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.58■■□□□ 1.05
RTF1Q92541 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RTF1Q92541 PPP6R2P1-201ENST00000450880 1275 ntBASIC21.58■■□□□ 1.05
RTF1Q92541 AC098859.1-201ENST00000502915 1238 ntBASIC21.58■■□□□ 1.05
RTF1Q92541 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC21.58■■□□□ 1.05
RTF1Q92541 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC21.58■■□□□ 1.05
RTF1Q92541 SPCS2P1-201ENST00000561636 679 ntBASIC21.58■■□□□ 1.05
RTF1Q92541 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC21.58■■□□□ 1.05
RTF1Q92541 AC138649.4-201ENST00000612222 287 ntBASIC21.58■■□□□ 1.05
RTF1Q92541 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC21.58■■□□□ 1.05
RTF1Q92541 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC21.58■■□□□ 1.05
RTF1Q92541 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC21.58■■□□□ 1.04
RTF1Q92541 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC21.58■■□□□ 1.04
RTF1Q92541 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
RTF1Q92541 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.04
RTF1Q92541 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
RTF1Q92541 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
RTF1Q92541 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RTF1Q92541 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
RTF1Q92541 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC21.58■■□□□ 1.04
RTF1Q92541 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
RTF1Q92541 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
RTF1Q92541 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.57■■□□□ 1.04
RTF1Q92541 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC21.57■■□□□ 1.04
RTF1Q92541 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC21.57■■□□□ 1.04
RTF1Q92541 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
RTF1Q92541 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC21.57■■□□□ 1.04
RTF1Q92541 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC21.57■■□□□ 1.04
RTF1Q92541 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
RTF1Q92541 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
RTF1Q92541 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC21.57■■□□□ 1.04
RTF1Q92541 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC21.57■■□□□ 1.04
RTF1Q92541 AC093214.1-201ENST00000511688 1107 ntBASIC21.57■■□□□ 1.04
RTF1Q92541 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC21.57■■□□□ 1.04
RTF1Q92541 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
RTF1Q92541 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.57■■□□□ 1.04
RTF1Q92541 AC092364.2-202ENST00000597012 1073 ntBASIC21.57■■□□□ 1.04
RTF1Q92541 AC003101.2-201ENST00000612557 442 ntBASIC21.57■■□□□ 1.04
RTF1Q92541 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC21.57■■□□□ 1.04
RTF1Q92541 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
RTF1Q92541 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RTF1Q92541 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms