Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-3Q8TAU0 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 SPDYE11-202ENST00000450699 704 ntBASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 AP005018.1-201ENST00000525475 301 ntBASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 NOP2-220ENST00000545915 630 ntTSL 2 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 RARRES2P8-201ENST00000566335 367 ntBASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 SPDYE9P-201ENST00000570642 692 ntBASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 SPDYE10P-202ENST00000612005 668 ntBASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 SPDYE8P-202ENST00000612377 668 ntBASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-3Q8TAU0 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 RPL30-202ENST00000396070 440 ntTSL 2 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 AL512638.1-201ENST00000457493 794 ntBASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-3Q8TAU0 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
NKX2-3Q8TAU0 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-3Q8TAU0 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.54■□□□□ 0.72
NKX2-3Q8TAU0 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-3Q8TAU0 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
NKX2-3Q8TAU0 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-3Q8TAU0 WASH6P-202ENST00000359512 1437 ntBASIC19.54■□□□□ 0.72
NKX2-3Q8TAU0 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC19.54■□□□□ 0.72
NKX2-3Q8TAU0 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-3Q8TAU0 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms