Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC21.67■■□□□ 1.06
COL3A1P02461 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 CYP4F24P-201ENST00000586049 1580 ntBASIC21.67■■□□□ 1.06
COL3A1P02461 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
COL3A1P02461 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC21.67■■□□□ 1.06
COL3A1P02461 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC21.67■■□□□ 1.06
COL3A1P02461 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
COL3A1P02461 AL590560.3-201ENST00000623350 461 ntBASIC21.67■■□□□ 1.06
COL3A1P02461 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC21.67■■□□□ 1.06
COL3A1P02461 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 CETN4P-206ENST00000642099 2168 ntBASIC21.67■■□□□ 1.06
COL3A1P02461 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC21.67■■□□□ 1.06
COL3A1P02461 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC21.67■■□□□ 1.06
COL3A1P02461 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL3A1P02461 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL3A1P02461 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL3A1P02461 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL3A1P02461 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC21.66■■□□□ 1.06
COL3A1P02461 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC21.66■■□□□ 1.06
COL3A1P02461 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC21.66■■□□□ 1.06
COL3A1P02461 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC21.66■■□□□ 1.06
COL3A1P02461 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL3A1P02461 SPDYE17-201ENST00000412399 783 ntBASIC21.66■■□□□ 1.06
COL3A1P02461 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC21.66■■□□□ 1.06
COL3A1P02461 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC21.66■■□□□ 1.06
COL3A1P02461 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC21.66■■□□□ 1.06
COL3A1P02461 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC21.66■■□□□ 1.06
COL3A1P02461 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL3A1P02461 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
COL3A1P02461 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL3A1P02461 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL3A1P02461 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.66■■□□□ 1.06
COL3A1P02461 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC21.66■■□□□ 1.06
COL3A1P02461 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL3A1P02461 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
COL3A1P02461 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL3A1P02461 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL3A1P02461 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL3A1P02461 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC21.66■■□□□ 1.06
COL3A1P02461 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL3A1P02461 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COL3A1P02461 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC21.66■■□□□ 1.06
COL3A1P02461 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC21.66■■□□□ 1.06
COL3A1P02461 GRAMD4P3-201ENST00000621665 1669 ntBASIC21.65■■□□□ 1.06
COL3A1P02461 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL3A1P02461 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL3A1P02461 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC21.65■■□□□ 1.06
COL3A1P02461 WDR53-203ENST00000429115 683 ntTSL 2 BASIC21.65■■□□□ 1.06
COL3A1P02461 AC241585.1-201ENST00000433527 519 ntBASIC21.65■■□□□ 1.06
COL3A1P02461 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL3A1P02461 MTND6P24-201ENST00000440466 518 ntBASIC21.65■■□□□ 1.06
COL3A1P02461 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC21.65■■□□□ 1.06
COL3A1P02461 IGHV3-42-201ENST00000520410 361 ntBASIC21.65■■□□□ 1.06
COL3A1P02461 ZNF890P-202ENST00000530367 1156 ntBASIC21.65■■□□□ 1.06
COL3A1P02461 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC21.65■■□□□ 1.06
COL3A1P02461 IMPDH1P4-201ENST00000445028 1534 ntBASIC21.65■■□□□ 1.06
COL3A1P02461 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL3A1P02461 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC21.65■■□□□ 1.06
COL3A1P02461 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC21.65■■□□□ 1.06
COL3A1P02461 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL3A1P02461 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL3A1P02461 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
COL3A1P02461 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL3A1P02461 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC21.65■■□□□ 1.06
COL3A1P02461 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL3A1P02461 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
COL3A1P02461 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL3A1P02461 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL3A1P02461 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
COL3A1P02461 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
COL3A1P02461 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC21.65■■□□□ 1.06
COL3A1P02461 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
COL3A1P02461 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL3A1P02461 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
COL3A1P02461 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
COL3A1P02461 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC21.64■■□□□ 1.06
COL3A1P02461 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC21.64■■□□□ 1.06
COL3A1P02461 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC21.64■■□□□ 1.06
COL3A1P02461 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC21.64■■□□□ 1.06
COL3A1P02461 AC004840.1-201ENST00000636359 365 ntBASIC21.64■■□□□ 1.06
COL3A1P02461 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC21.64■■□□□ 1.06
COL3A1P02461 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL3A1P02461 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL3A1P02461 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL3A1P02461 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC21.64■■□□□ 1.05
COL3A1P02461 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
COL3A1P02461 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
COL3A1P02461 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms