Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.14■□□□□ 0.17
UBFD1O14562 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.14■□□□□ 0.17
UBFD1O14562 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.14■□□□□ 0.17
UBFD1O14562 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.14■□□□□ 0.17
UBFD1O14562 RPS2P1-201ENST00000434010 821 ntBASIC16.14■□□□□ 0.17
UBFD1O14562 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 POU5F1P6-201ENST00000466990 990 ntBASIC16.14■□□□□ 0.17
UBFD1O14562 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 AC087641.1-201ENST00000557561 1021 ntBASIC16.14■□□□□ 0.17
UBFD1O14562 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.14■□□□□ 0.17
UBFD1O14562 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
UBFD1O14562 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.14■□□□□ 0.17
UBFD1O14562 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
UBFD1O14562 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.14■□□□□ 0.17
UBFD1O14562 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
UBFD1O14562 HYMAI-201ENST00000635591 3347 ntBASIC16.14■□□□□ 0.17
UBFD1O14562 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
UBFD1O14562 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
UBFD1O14562 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
UBFD1O14562 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
UBFD1O14562 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
UBFD1O14562 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
UBFD1O14562 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
UBFD1O14562 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
UBFD1O14562 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
UBFD1O14562 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.13■□□□□ 0.17
UBFD1O14562 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.13■□□□□ 0.17
UBFD1O14562 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.13■□□□□ 0.17
UBFD1O14562 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.13■□□□□ 0.17
UBFD1O14562 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
UBFD1O14562 AC012313.10-201ENST00000623509 926 ntBASIC16.13■□□□□ 0.17
UBFD1O14562 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
UBFD1O14562 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.13■□□□□ 0.17
UBFD1O14562 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.13■□□□□ 0.17
UBFD1O14562 AL596257.1-201ENST00000641463 2694 ntBASIC16.13■□□□□ 0.17
UBFD1O14562 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
UBFD1O14562 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
UBFD1O14562 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
UBFD1O14562 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.13■□□□□ 0.17
UBFD1O14562 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
UBFD1O14562 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.13■□□□□ 0.17
UBFD1O14562 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
UBFD1O14562 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
UBFD1O14562 OR6D1P-203ENST00000641209 4860 ntBASIC16.13■□□□□ 0.17
UBFD1O14562 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.13■□□□□ 0.17
UBFD1O14562 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
UBFD1O14562 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.12■□□□□ 0.17
UBFD1O14562 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
UBFD1O14562 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
UBFD1O14562 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.12■□□□□ 0.17
UBFD1O14562 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
UBFD1O14562 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
UBFD1O14562 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
UBFD1O14562 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
UBFD1O14562 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.12■□□□□ 0.17
UBFD1O14562 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
UBFD1O14562 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
UBFD1O14562 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.12■□□□□ 0.17
UBFD1O14562 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
UBFD1O14562 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.12■□□□□ 0.17
UBFD1O14562 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.12■□□□□ 0.17
UBFD1O14562 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.12■□□□□ 0.17
UBFD1O14562 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.12■□□□□ 0.17
UBFD1O14562 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.12■□□□□ 0.17
UBFD1O14562 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.12■□□□□ 0.17
UBFD1O14562 AC005412.3-201ENST00000580309 715 ntBASIC16.12■□□□□ 0.17
UBFD1O14562 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
UBFD1O14562 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
UBFD1O14562 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.12■□□□□ 0.17
UBFD1O14562 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
UBFD1O14562 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.12■□□□□ 0.17
UBFD1O14562 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.12■□□□□ 0.17
UBFD1O14562 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.12■□□□□ 0.17
UBFD1O14562 AC129492.6-201ENST00000611383 1305 ntBASIC16.12■□□□□ 0.17
UBFD1O14562 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.12■□□□□ 0.17
UBFD1O14562 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
UBFD1O14562 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
UBFD1O14562 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.11■□□□□ 0.17
UBFD1O14562 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
UBFD1O14562 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
UBFD1O14562 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
UBFD1O14562 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
UBFD1O14562 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
UBFD1O14562 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
UBFD1O14562 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 250.9 ms