Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 AC024909.3-201ENST00000611513 2257 ntBASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 AL136038.3-201ENST00000561909 1096 ntBASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 FRMD8P1-201ENST00000440433 1524 ntBASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHMP1AQ9HD42 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 OR2I1P-209ENST00000641730 5365 ntBASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 TMPOP1-202ENST00000424642 1267 ntBASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 CHCHD2P8-201ENST00000429873 447 ntBASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 NTF6B-201ENST00000591913 560 ntBASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 TUBB8P12-201ENST00000308911 1335 ntBASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 TUBB7P-202ENST00000428444 1305 ntBASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 TUBB8P7-204ENST00000567960 1332 ntBASIC14.4□□□□□ -0.1
CHMP1AQ9HD42 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.4□□□□□ -0.11
CHMP1AQ9HD42 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.4□□□□□ -0.11
CHMP1AQ9HD42 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms