Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 AL590787.1-201ENST00000568856 1315 ntBASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 AL009178.2-201ENST00000597278 2719 ntBASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 POU5F1P6-201ENST00000466990 990 ntBASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 AL136038.3-201ENST00000561909 1096 ntBASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 AL031731.1-201ENST00000642131 2094 ntBASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 KRT8P39-201ENST00000396270 1433 ntBASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 AP005117.1-202ENST00000581724 1908 ntBASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 CHCHD2P8-201ENST00000429873 447 ntBASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 NTF6B-201ENST00000591913 560 ntBASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 AC073592.4-201ENST00000623827 446 ntBASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28BQ9BUN5 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28BQ9BUN5 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms