Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 AC026954.1-201ENST00000429771 1293 ntBASIC16.19■□□□□ 0.18
VPS13AQ96RL7 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 KRT8P22-201ENST00000562317 1415 ntBASIC16.19■□□□□ 0.18
VPS13AQ96RL7 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 CROCCP2-202ENST00000412962 2773 ntBASIC16.18■□□□□ 0.18
VPS13AQ96RL7 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 MIR33B-201ENST00000385104 96 ntBASIC16.18■□□□□ 0.18
VPS13AQ96RL7 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 GNRHR2-203ENST00000581100 1187 ntBASIC16.18■□□□□ 0.18
VPS13AQ96RL7 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 FRMD8P1-201ENST00000440433 1524 ntBASIC16.18■□□□□ 0.18
VPS13AQ96RL7 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.18■□□□□ 0.18
VPS13AQ96RL7 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 HCG18-245ENST00000602550 559 ntTSL 4 BASIC16.18■□□□□ 0.18
VPS13AQ96RL7 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 AC098859.1-201ENST00000502915 1238 ntBASIC16.17■□□□□ 0.18
VPS13AQ96RL7 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 AL139327.4-201ENST00000612362 153 ntBASIC16.17■□□□□ 0.18
VPS13AQ96RL7 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 AC108860.2-201ENST00000562760 2183 ntBASIC16.17■□□□□ 0.18
VPS13AQ96RL7 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 AC012313.1-201ENST00000593393 3059 ntBASIC16.17■□□□□ 0.18
VPS13AQ96RL7 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 CLK3P2-201ENST00000427566 1453 ntBASIC16.17■□□□□ 0.18
VPS13AQ96RL7 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13AQ96RL7 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 SERBP1P3-201ENST00000459980 809 ntBASIC16.16■□□□□ 0.18
VPS13AQ96RL7 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 AC010328.2-201ENST00000597698 1111 ntBASIC16.16■□□□□ 0.18
VPS13AQ96RL7 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS13AQ96RL7 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms