Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 NUS1P2-201ENST00000417358 873 ntBASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 PAUPAR-201ENST00000630360 2965 ntBASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 ALOX12P2-203ENST00000570921 1945 ntBASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 AC103564.2-201ENST00000432853 1299 ntBASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 HLA-J-202ENST00000469281 1241 ntBASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 TNFRSF10A-AS1-201ENST00000518308 637 ntTSL 3 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 AC009533.2-201ENST00000543664 586 ntBASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 TBCB-205ENST00000585746 875 ntTSL 3 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 AL732292.2-201ENST00000609649 430 ntBASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 CCNC-219ENST00000627680 896 ntTSL 5 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 ME2P1-201ENST00000426028 1970 ntBASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
DEPDC4Q8N2C3 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
DEPDC4Q8N2C3 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
DEPDC4Q8N2C3 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
DEPDC4Q8N2C3 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
DEPDC4Q8N2C3 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
DEPDC4Q8N2C3 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
DEPDC4Q8N2C3 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
DEPDC4Q8N2C3 AC024909.3-201ENST00000611513 2257 ntBASIC15.55■□□□□ 0.08
DEPDC4Q8N2C3 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.55■□□□□ 0.08
DEPDC4Q8N2C3 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms