Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 AC079776.2-201ENST00000641154 1609 ntBASIC10.34□□□□□ -0.75
LINC00643Q86TS7 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 PARN-202ENST00000420015 2360 ntTSL 2 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
LINC00643Q86TS7 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 ASL-204ENST00000395331 1538 ntTSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 AL356740.2-201ENST00000601559 647 ntBASIC10.33□□□□□ -0.76
LINC00643Q86TS7 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 AC131902.2-201ENST00000566892 2172 ntBASIC10.33□□□□□ -0.76
LINC00643Q86TS7 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms