Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 AC010319.3-201ENST00000597028 470 ntBASIC20.65■□□□□ 0.9
RC3H1Q5TC82 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.9
RC3H1Q5TC82 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
RC3H1Q5TC82 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
RC3H1Q5TC82 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
RC3H1Q5TC82 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
RC3H1Q5TC82 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
RC3H1Q5TC82 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 MPV17-208ENST00000405076 603 ntTSL 5 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 BNIP3P42-201ENST00000454982 569 ntBASIC20.64■□□□□ 0.89
RC3H1Q5TC82 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 BNIP3P29-201ENST00000598302 571 ntBASIC20.64■□□□□ 0.89
RC3H1Q5TC82 AC011447.5-201ENST00000616168 564 ntBASIC20.64■□□□□ 0.89
RC3H1Q5TC82 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC20.64■□□□□ 0.89
RC3H1Q5TC82 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 WNT11-204ENST00000621122 789 ntTSL 5 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 PFAS-212ENST00000625942 396 ntTSL 5 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
RC3H1Q5TC82 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 AL645728.1-201ENST00000366221 2101 ntBASIC20.63■□□□□ 0.89
RC3H1Q5TC82 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 KRT43P-201ENST00000434019 910 ntBASIC20.63■□□□□ 0.89
RC3H1Q5TC82 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 RN7SL399P-201ENST00000471648 279 ntBASIC20.63■□□□□ 0.89
RC3H1Q5TC82 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 PAM16-215ENST00000577031 548 ntTSL 4 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 GGT4P-201ENST00000623672 1708 ntBASIC20.63■□□□□ 0.89
RC3H1Q5TC82 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC20.63■□□□□ 0.89
RC3H1Q5TC82 Z97205.2-201ENST00000564697 1639 ntBASIC20.63■□□□□ 0.89
RC3H1Q5TC82 AC067852.2-201ENST00000590513 2313 ntBASIC20.62■□□□□ 0.89
RC3H1Q5TC82 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RC3H1Q5TC82 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RC3H1Q5TC82 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RC3H1Q5TC82 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
RC3H1Q5TC82 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RC3H1Q5TC82 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RC3H1Q5TC82 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RC3H1Q5TC82 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC20.62■□□□□ 0.89
RC3H1Q5TC82 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.62■□□□□ 0.89
RC3H1Q5TC82 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
RC3H1Q5TC82 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RC3H1Q5TC82 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RC3H1Q5TC82 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms