Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP39Q53GS9 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USP39Q53GS9 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP39Q53GS9 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP39Q53GS9 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
USP39Q53GS9 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
USP39Q53GS9 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP39Q53GS9 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.91■□□□□ 0.3
USP39Q53GS9 MIR661-201ENST00000384842 89 ntBASIC16.91■□□□□ 0.3
USP39Q53GS9 AC097493.3-201ENST00000509725 367 ntBASIC16.91■□□□□ 0.3
USP39Q53GS9 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.91■□□□□ 0.3
USP39Q53GS9 ALG1L8P-201ENST00000533887 760 ntBASIC16.91■□□□□ 0.3
USP39Q53GS9 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
USP39Q53GS9 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.91■□□□□ 0.3
USP39Q53GS9 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.91■□□□□ 0.3
USP39Q53GS9 AC008267.7-201ENST00000624570 1194 ntBASIC16.91■□□□□ 0.3
USP39Q53GS9 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.91■□□□□ 0.3
USP39Q53GS9 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.91■□□□□ 0.3
USP39Q53GS9 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
USP39Q53GS9 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP39Q53GS9 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
USP39Q53GS9 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP39Q53GS9 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
USP39Q53GS9 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
USP39Q53GS9 LYSMD4-203ENST00000378904 2122 ntBASIC16.91■□□□□ 0.3
USP39Q53GS9 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP39Q53GS9 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.91■□□□□ 0.3
USP39Q53GS9 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP39Q53GS9 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP39Q53GS9 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.9■□□□□ 0.3
USP39Q53GS9 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.9■□□□□ 0.3
USP39Q53GS9 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
USP39Q53GS9 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
USP39Q53GS9 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
USP39Q53GS9 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 GAPDHP21-201ENST00000450301 1010 ntBASIC16.9■□□□□ 0.3
USP39Q53GS9 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.9■□□□□ 0.3
USP39Q53GS9 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.9■□□□□ 0.3
USP39Q53GS9 AL358472.5-202ENST00000641448 1267 ntBASIC16.9■□□□□ 0.3
USP39Q53GS9 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
USP39Q53GS9 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.9■□□□□ 0.3
USP39Q53GS9 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
USP39Q53GS9 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.9■□□□□ 0.3
USP39Q53GS9 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP39Q53GS9 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
USP39Q53GS9 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
USP39Q53GS9 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
USP39Q53GS9 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.89■□□□□ 0.3
USP39Q53GS9 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.89■□□□□ 0.3
USP39Q53GS9 AC099398.1-201ENST00000567919 2776 ntBASIC16.89■□□□□ 0.3
USP39Q53GS9 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
USP39Q53GS9 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
USP39Q53GS9 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.89■□□□□ 0.29
USP39Q53GS9 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.89■□□□□ 0.29
USP39Q53GS9 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
USP39Q53GS9 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.89■□□□□ 0.29
USP39Q53GS9 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.89■□□□□ 0.29
USP39Q53GS9 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.89■□□□□ 0.29
USP39Q53GS9 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.89■□□□□ 0.29
USP39Q53GS9 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.89■□□□□ 0.29
USP39Q53GS9 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.89■□□□□ 0.29
USP39Q53GS9 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
USP39Q53GS9 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.89■□□□□ 0.29
USP39Q53GS9 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.89■□□□□ 0.29
USP39Q53GS9 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.89■□□□□ 0.29
USP39Q53GS9 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
USP39Q53GS9 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.89■□□□□ 0.29
USP39Q53GS9 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
USP39Q53GS9 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
USP39Q53GS9 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP39Q53GS9 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms