Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 ACE-203ENST00000413513 2237 ntTSL 2 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 AC005089.1-201ENST00000619486 2241 ntBASIC12.57□□□□□ -0.4
HLA-DQA1P01909 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 AL355075.4-201ENST00000554988 638 ntBASIC12.57□□□□□ -0.4
HLA-DQA1P01909 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 SNX18-202ENST00000343017 3140 ntBASIC12.57□□□□□ -0.4
HLA-DQA1P01909 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DQA1P01909 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DQA1P01909 HIST1H2APS4-201ENST00000362070 348 ntBASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms