Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
HOXC11O43248 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.86■□□□□ 0.29
HOXC11O43248 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HOXC11O43248 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
HOXC11O43248 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.86■□□□□ 0.29
HOXC11O43248 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.86■□□□□ 0.29
HOXC11O43248 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.86■□□□□ 0.29
HOXC11O43248 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.86■□□□□ 0.29
HOXC11O43248 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.86■□□□□ 0.29
HOXC11O43248 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.86■□□□□ 0.29
HOXC11O43248 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.86■□□□□ 0.29
HOXC11O43248 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.86■□□□□ 0.29
HOXC11O43248 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.86■□□□□ 0.29
HOXC11O43248 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.86■□□□□ 0.29
HOXC11O43248 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 AC008761.3-201ENST00000624803 892 ntBASIC16.86■□□□□ 0.29
HOXC11O43248 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.86■□□□□ 0.29
HOXC11O43248 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.86■□□□□ 0.29
HOXC11O43248 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 AC060834.1-201ENST00000443027 2032 ntBASIC16.86■□□□□ 0.29
HOXC11O43248 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC11O43248 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HOXC11O43248 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.85■□□□□ 0.29
HOXC11O43248 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC11O43248 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.85■□□□□ 0.29
HOXC11O43248 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HOXC11O43248 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
HOXC11O43248 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 AC093724.1-201ENST00000448659 1027 ntBASIC16.85■□□□□ 0.29
HOXC11O43248 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
HOXC11O43248 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC11O43248 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.85■□□□□ 0.29
HOXC11O43248 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC11O43248 LINC02560-201ENST00000596379 459 ntBASIC16.85■□□□□ 0.29
HOXC11O43248 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
HOXC11O43248 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
HOXC11O43248 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.85■□□□□ 0.29
HOXC11O43248 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC11O43248 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.85■□□□□ 0.29
HOXC11O43248 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.85■□□□□ 0.29
HOXC11O43248 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC11O43248 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
HOXC11O43248 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC11O43248 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC11O43248 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.85■□□□□ 0.29
HOXC11O43248 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC11O43248 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC11O43248 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HOXC11O43248 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HOXC11O43248 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.84■□□□□ 0.29
HOXC11O43248 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXC11O43248 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.84■□□□□ 0.29
HOXC11O43248 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.84■□□□□ 0.29
HOXC11O43248 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
HOXC11O43248 MRPS18AP1-201ENST00000414458 589 ntBASIC16.84■□□□□ 0.29
HOXC11O43248 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.84■□□□□ 0.29
HOXC11O43248 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXC11O43248 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.84■□□□□ 0.29
HOXC11O43248 RNA5SP410-201ENST00000516285 106 ntBASIC16.84■□□□□ 0.29
HOXC11O43248 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXC11O43248 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXC11O43248 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.84■□□□□ 0.29
HOXC11O43248 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.84■□□□□ 0.29
HOXC11O43248 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms