Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC13.46□□□□□ -0.25
HMGB3O15347 AC004263.2-201ENST00000617183 678 ntBASIC13.46□□□□□ -0.25
HMGB3O15347 AC009154.2-201ENST00000621177 724 ntBASIC13.46□□□□□ -0.25
HMGB3O15347 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC13.46□□□□□ -0.25
HMGB3O15347 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HMGB3O15347 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.46□□□□□ -0.26
HMGB3O15347 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HMGB3O15347 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
HMGB3O15347 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HMGB3O15347 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
HMGB3O15347 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
HMGB3O15347 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HMGB3O15347 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
HMGB3O15347 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
HMGB3O15347 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
HMGB3O15347 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
HMGB3O15347 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC13.45□□□□□ -0.26
HMGB3O15347 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.45□□□□□ -0.26
HMGB3O15347 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
HMGB3O15347 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 AL645728.1-201ENST00000366221 2101 ntBASIC13.45□□□□□ -0.26
HMGB3O15347 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 SPATA13-203ENST00000382108 8463 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
HMGB3O15347 TLR6-202ENST00000436693 5880 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC13.45□□□□□ -0.26
HMGB3O15347 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 ABHD17AP1-201ENST00000358206 933 ntBASIC13.45□□□□□ -0.26
HMGB3O15347 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
HMGB3O15347 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
HMGB3O15347 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
HMGB3O15347 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 AC002558.1-201ENST00000488906 803 ntBASIC13.45□□□□□ -0.26
HMGB3O15347 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC13.45□□□□□ -0.26
HMGB3O15347 REXO2-216ENST00000544196 452 ntTSL 3 BASIC13.45□□□□□ -0.26
HMGB3O15347 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC13.45□□□□□ -0.26
HMGB3O15347 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC13.45□□□□□ -0.26
HMGB3O15347 AC026471.5-201ENST00000615068 467 ntBASIC13.45□□□□□ -0.26
HMGB3O15347 BLK-205ENST00000529894 2017 ntTSL 5 BASIC13.45□□□□□ -0.26
HMGB3O15347 HDAC2-205ENST00000519065 9874 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC13.45□□□□□ -0.26
HMGB3O15347 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 EGFEM1P-202ENST00000431685 1563 ntBASIC13.45□□□□□ -0.26
HMGB3O15347 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC13.45□□□□□ -0.26
HMGB3O15347 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC13.45□□□□□ -0.26
HMGB3O15347 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HMGB3O15347 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.44□□□□□ -0.26
HMGB3O15347 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.44□□□□□ -0.26
HMGB3O15347 LINC02228-204ENST00000642115 2962 ntBASIC13.44□□□□□ -0.26
HMGB3O15347 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC13.44□□□□□ -0.26
HMGB3O15347 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC13.44□□□□□ -0.26
HMGB3O15347 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
HMGB3O15347 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 RPS2P55-201ENST00000397318 883 ntBASIC13.44□□□□□ -0.26
HMGB3O15347 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
HMGB3O15347 SRP19-202ENST00000445150 833 ntTSL 2 BASIC13.44□□□□□ -0.26
HMGB3O15347 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC13.44□□□□□ -0.26
HMGB3O15347 AC107956.1-201ENST00000494359 873 ntBASIC13.44□□□□□ -0.26
HMGB3O15347 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
HMGB3O15347 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.44□□□□□ -0.26
HMGB3O15347 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC13.44□□□□□ -0.26
HMGB3O15347 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC13.44□□□□□ -0.26
HMGB3O15347 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 VILL-207ENST00000465644 1857 ntTSL 5 BASIC13.44□□□□□ -0.26
HMGB3O15347 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HMGB3O15347 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC13.44□□□□□ -0.26
HMGB3O15347 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms