Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
UBFD1O14562 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
UBFD1O14562 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
UBFD1O14562 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
UBFD1O14562 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
UBFD1O14562 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.16■□□□□ 0.18
UBFD1O14562 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.16■□□□□ 0.18
UBFD1O14562 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.16■□□□□ 0.18
UBFD1O14562 DUSP5P1-201ENST00000441325 1139 ntBASIC16.16■□□□□ 0.18
UBFD1O14562 SAPCD2P3-201ENST00000455031 850 ntBASIC16.16■□□□□ 0.18
UBFD1O14562 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.16■□□□□ 0.18
UBFD1O14562 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.16■□□□□ 0.18
UBFD1O14562 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.16■□□□□ 0.18
UBFD1O14562 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.16■□□□□ 0.18
UBFD1O14562 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.16■□□□□ 0.18
UBFD1O14562 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.16■□□□□ 0.18
UBFD1O14562 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.16■□□□□ 0.18
UBFD1O14562 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.16■□□□□ 0.18
UBFD1O14562 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.16■□□□□ 0.18
UBFD1O14562 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.16■□□□□ 0.18
UBFD1O14562 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.16■□□□□ 0.18
UBFD1O14562 AC010654.1-201ENST00000615722 808 ntBASIC16.16■□□□□ 0.18
UBFD1O14562 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.16■□□□□ 0.18
UBFD1O14562 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.16■□□□□ 0.18
UBFD1O14562 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.16■□□□□ 0.18
UBFD1O14562 LINC01144-201ENST00000626198 1710 ntBASIC16.16■□□□□ 0.18
UBFD1O14562 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.16■□□□□ 0.18
UBFD1O14562 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
UBFD1O14562 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
UBFD1O14562 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
UBFD1O14562 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.16■□□□□ 0.18
UBFD1O14562 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.16■□□□□ 0.18
UBFD1O14562 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.15■□□□□ 0.18
UBFD1O14562 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
UBFD1O14562 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.15■□□□□ 0.18
UBFD1O14562 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
UBFD1O14562 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.15■□□□□ 0.18
UBFD1O14562 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
UBFD1O14562 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.15■□□□□ 0.18
UBFD1O14562 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.15■□□□□ 0.18
UBFD1O14562 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.15■□□□□ 0.18
UBFD1O14562 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.15■□□□□ 0.18
UBFD1O14562 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.15■□□□□ 0.18
UBFD1O14562 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 PRELID1P1-202ENST00000567272 903 ntBASIC16.15■□□□□ 0.18
UBFD1O14562 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.15■□□□□ 0.18
UBFD1O14562 AC006557.2-201ENST00000592985 1240 ntBASIC16.15■□□□□ 0.18
UBFD1O14562 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
UBFD1O14562 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.15■□□□□ 0.18
UBFD1O14562 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.15■□□□□ 0.18
UBFD1O14562 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.15■□□□□ 0.18
UBFD1O14562 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
UBFD1O14562 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.15■□□□□ 0.18
UBFD1O14562 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
UBFD1O14562 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
UBFD1O14562 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.14■□□□□ 0.18
UBFD1O14562 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
UBFD1O14562 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
UBFD1O14562 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.14■□□□□ 0.18
UBFD1O14562 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
UBFD1O14562 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
UBFD1O14562 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.14■□□□□ 0.17
UBFD1O14562 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms