Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 AL773604.1-201ENST00000617417 272 ntBASIC15.81■□□□□ 0.12
UPK1AO00322 GGTLC5P-201ENST00000617623 998 ntBASIC15.81■□□□□ 0.12
UPK1AO00322 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
UPK1AO00322 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
UPK1AO00322 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.81■□□□□ 0.12
UPK1AO00322 AL603832.2-201ENST00000566195 2125 ntBASIC15.8■□□□□ 0.12
UPK1AO00322 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.8■□□□□ 0.12
UPK1AO00322 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
UPK1AO00322 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.8■□□□□ 0.12
UPK1AO00322 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.8■□□□□ 0.12
UPK1AO00322 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.8■□□□□ 0.12
UPK1AO00322 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
UPK1AO00322 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.8■□□□□ 0.12
UPK1AO00322 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
UPK1AO00322 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
UPK1AO00322 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
UPK1AO00322 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UPK1AO00322 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
UPK1AO00322 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.79■□□□□ 0.12
UPK1AO00322 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
UPK1AO00322 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
UPK1AO00322 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.79■□□□□ 0.12
UPK1AO00322 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 MRPL3P1-201ENST00000400109 1033 ntBASIC15.79■□□□□ 0.12
UPK1AO00322 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.79■□□□□ 0.12
UPK1AO00322 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 AL031284.1-201ENST00000419297 478 ntBASIC15.79■□□□□ 0.12
UPK1AO00322 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
UPK1AO00322 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.79■□□□□ 0.12
UPK1AO00322 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC15.79■□□□□ 0.12
UPK1AO00322 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.79■□□□□ 0.12
UPK1AO00322 AL049840.3-201ENST00000602669 611 ntBASIC15.79■□□□□ 0.12
UPK1AO00322 AC013467.2-201ENST00000605472 835 ntBASIC15.79■□□□□ 0.12
UPK1AO00322 PGM5P2-202ENST00000637225 1043 ntBASIC15.79■□□□□ 0.12
UPK1AO00322 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
UPK1AO00322 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
UPK1AO00322 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 AC006277.1-201ENST00000624348 1610 ntBASIC15.79■□□□□ 0.12
UPK1AO00322 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
UPK1AO00322 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
UPK1AO00322 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 AL596087.1-201ENST00000400979 1969 ntBASIC15.78■□□□□ 0.12
UPK1AO00322 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.78■□□□□ 0.12
UPK1AO00322 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms