Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 MIR4492-201ENST00000581627 80 ntBASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 AL591684.3-201ENST00000605187 298 ntBASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 AP001269.4-201ENST00000609611 512 ntBASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TRIM49D1C9J1S8 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 KRT8P39-201ENST00000396270 1433 ntBASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 AL049597.2-201ENST00000565575 961 ntBASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 MPDU1-223ENST00000582151 728 ntBASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 AC103702.1-201ENST00000548801 2630 ntBASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TRIM49D1C9J1S8 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms