Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 MRPS18AP1-201ENST00000414458 589 ntBASIC18.7■□□□□ 0.58
COL20A1Q9P218 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 RNA5SP410-201ENST00000516285 106 ntBASIC18.7■□□□□ 0.58
COL20A1Q9P218 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 AC100757.3-201ENST00000622361 1406 ntBASIC18.7■□□□□ 0.58
COL20A1Q9P218 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL20A1Q9P218 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.7■□□□□ 0.58
COL20A1Q9P218 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 AL589702.1-201ENST00000641229 1509 ntBASIC18.69■□□□□ 0.58
COL20A1Q9P218 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 AC236430.1-201ENST00000402231 743 ntBASIC18.69■□□□□ 0.58
COL20A1Q9P218 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 AC027369.6-201ENST00000525520 931 ntBASIC18.69■□□□□ 0.58
COL20A1Q9P218 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 GREM1-201ENST00000560677 623 ntTSL 4 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 RN7SL204P-201ENST00000582831 262 ntBASIC18.69■□□□□ 0.58
COL20A1Q9P218 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 AL590560.3-201ENST00000623350 461 ntBASIC18.69■□□□□ 0.58
COL20A1Q9P218 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL20A1Q9P218 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL20A1Q9P218 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL20A1Q9P218 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
COL20A1Q9P218 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COL20A1Q9P218 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL20A1Q9P218 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL20A1Q9P218 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL20A1Q9P218 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL20A1Q9P218 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.68■□□□□ 0.58
COL20A1Q9P218 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL20A1Q9P218 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL20A1Q9P218 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.68■□□□□ 0.58
COL20A1Q9P218 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL20A1Q9P218 AC241585.1-201ENST00000433527 519 ntBASIC18.68■□□□□ 0.58
COL20A1Q9P218 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.68■□□□□ 0.58
COL20A1Q9P218 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.68■□□□□ 0.58
COL20A1Q9P218 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL20A1Q9P218 AC138761.1-201ENST00000584393 385 ntBASIC18.68■□□□□ 0.58
COL20A1Q9P218 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
COL20A1Q9P218 AL133215.2-201ENST00000609242 977 ntBASIC18.68■□□□□ 0.58
COL20A1Q9P218 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.68■□□□□ 0.58
COL20A1Q9P218 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL20A1Q9P218 GGT3P-204ENST00000453783 1664 ntBASIC18.68■□□□□ 0.58
COL20A1Q9P218 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.68■□□□□ 0.58
COL20A1Q9P218 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.68■□□□□ 0.58
COL20A1Q9P218 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL20A1Q9P218 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL20A1Q9P218 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms