Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.33□□□□□ -0.11
COL12A1Q99715 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
COL12A1Q99715 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC14.33□□□□□ -0.11
COL12A1Q99715 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL12A1Q99715 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
COL12A1Q99715 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC14.33□□□□□ -0.12
COL12A1Q99715 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.33□□□□□ -0.12
COL12A1Q99715 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.33□□□□□ -0.12
COL12A1Q99715 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC14.33□□□□□ -0.12
COL12A1Q99715 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC14.33□□□□□ -0.12
COL12A1Q99715 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC14.33□□□□□ -0.12
COL12A1Q99715 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.33□□□□□ -0.12
COL12A1Q99715 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC14.33□□□□□ -0.12
COL12A1Q99715 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.33□□□□□ -0.12
COL12A1Q99715 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.33□□□□□ -0.12
COL12A1Q99715 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
COL12A1Q99715 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC14.33□□□□□ -0.12
COL12A1Q99715 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.33□□□□□ -0.12
COL12A1Q99715 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL12A1Q99715 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.33□□□□□ -0.12
COL12A1Q99715 TIMM17BP1-201ENST00000545713 516 ntBASIC14.33□□□□□ -0.12
COL12A1Q99715 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.33□□□□□ -0.12
COL12A1Q99715 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
COL12A1Q99715 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC14.32□□□□□ -0.12
COL12A1Q99715 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC14.32□□□□□ -0.12
COL12A1Q99715 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC14.32□□□□□ -0.12
COL12A1Q99715 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC14.32□□□□□ -0.12
COL12A1Q99715 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC14.32□□□□□ -0.12
COL12A1Q99715 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
COL12A1Q99715 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC14.32□□□□□ -0.12
COL12A1Q99715 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC14.32□□□□□ -0.12
COL12A1Q99715 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 PRKN-211ENST00000615065 261 ntTSL 5 BASIC14.32□□□□□ -0.12
COL12A1Q99715 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC14.32□□□□□ -0.12
COL12A1Q99715 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.32□□□□□ -0.12
COL12A1Q99715 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC14.32□□□□□ -0.12
COL12A1Q99715 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.32□□□□□ -0.12
COL12A1Q99715 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.32□□□□□ -0.12
COL12A1Q99715 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC14.32□□□□□ -0.12
COL12A1Q99715 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.32□□□□□ -0.12
COL12A1Q99715 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.32□□□□□ -0.12
COL12A1Q99715 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
COL12A1Q99715 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL12A1Q99715 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.32□□□□□ -0.12
COL12A1Q99715 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
COL12A1Q99715 HLA-DQB1-201ENST00000374943 1656 ntBASIC14.31□□□□□ -0.12
COL12A1Q99715 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.31□□□□□ -0.12
COL12A1Q99715 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
COL12A1Q99715 CDK2AP2P3-201ENST00000422476 372 ntBASIC14.31□□□□□ -0.12
COL12A1Q99715 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC14.31□□□□□ -0.12
COL12A1Q99715 BX284668.4-201ENST00000453917 508 ntBASIC14.31□□□□□ -0.12
COL12A1Q99715 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC14.31□□□□□ -0.12
COL12A1Q99715 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
COL12A1Q99715 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC14.31□□□□□ -0.12
COL12A1Q99715 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
COL12A1Q99715 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.31□□□□□ -0.12
COL12A1Q99715 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC14.31□□□□□ -0.12
COL12A1Q99715 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL12A1Q99715 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms