Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP47Q96K76 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
USP47Q96K76 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC23.18■■□□□ 1.3
USP47Q96K76 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC23.18■■□□□ 1.3
USP47Q96K76 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC23.18■■□□□ 1.3
USP47Q96K76 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC23.18■■□□□ 1.3
USP47Q96K76 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC23.18■■□□□ 1.3
USP47Q96K76 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC23.18■■□□□ 1.3
USP47Q96K76 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
USP47Q96K76 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC23.18■■□□□ 1.3
USP47Q96K76 SLC25A39P2-201ENST00000537614 270 ntBASIC23.18■■□□□ 1.3
USP47Q96K76 TSFM-210ENST00000550559 897 ntTSL 5 BASIC23.18■■□□□ 1.3
USP47Q96K76 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC23.18■■□□□ 1.3
USP47Q96K76 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC23.18■■□□□ 1.3
USP47Q96K76 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC23.18■■□□□ 1.3
USP47Q96K76 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC23.18■■□□□ 1.3
USP47Q96K76 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
USP47Q96K76 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC23.18■■□□□ 1.3
USP47Q96K76 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
USP47Q96K76 LINC01144-201ENST00000626198 1710 ntBASIC23.18■■□□□ 1.3
USP47Q96K76 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC23.18■■□□□ 1.3
USP47Q96K76 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC23.18■■□□□ 1.3
USP47Q96K76 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC23.18■■□□□ 1.3
USP47Q96K76 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP47Q96K76 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP47Q96K76 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
USP47Q96K76 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP47Q96K76 AL139400.1-201ENST00000366220 510 ntBASIC23.17■■□□□ 1.3
USP47Q96K76 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC23.17■■□□□ 1.3
USP47Q96K76 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC23.17■■□□□ 1.3
USP47Q96K76 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP47Q96K76 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC23.17■■□□□ 1.3
USP47Q96K76 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC23.17■■□□□ 1.3
USP47Q96K76 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC23.17■■□□□ 1.3
USP47Q96K76 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC23.17■■□□□ 1.3
USP47Q96K76 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC23.17■■□□□ 1.3
USP47Q96K76 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP47Q96K76 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP47Q96K76 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP47Q96K76 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC23.17■■□□□ 1.3
USP47Q96K76 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP47Q96K76 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP47Q96K76 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USP47Q96K76 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP47Q96K76 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USP47Q96K76 CD81-202ENST00000381036 880 ntTSL 3 BASIC23.16■■□□□ 1.3
USP47Q96K76 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC23.16■■□□□ 1.3
USP47Q96K76 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC23.16■■□□□ 1.3
USP47Q96K76 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC23.16■■□□□ 1.3
USP47Q96K76 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP47Q96K76 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC23.16■■□□□ 1.3
USP47Q96K76 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC23.16■■□□□ 1.3
USP47Q96K76 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP47Q96K76 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP47Q96K76 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC23.16■■□□□ 1.3
USP47Q96K76 RELA-227ENST00000615805 2236 ntTSL 5 BASIC23.16■■□□□ 1.3
USP47Q96K76 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USP47Q96K76 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC23.16■■□□□ 1.3
USP47Q96K76 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC23.16■■□□□ 1.3
USP47Q96K76 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
USP47Q96K76 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
USP47Q96K76 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP47Q96K76 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP47Q96K76 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP47Q96K76 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC23.16■■□□□ 1.3
USP47Q96K76 UXT-AS1-201ENST00000590504 1525 ntBASIC23.16■■□□□ 1.3
USP47Q96K76 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC23.16■■□□□ 1.3
USP47Q96K76 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP47Q96K76 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC23.16■■□□□ 1.3
USP47Q96K76 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
USP47Q96K76 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
USP47Q96K76 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP47Q96K76 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP47Q96K76 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC23.15■■□□□ 1.3
USP47Q96K76 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP47Q96K76 AC005237.2-201ENST00000434368 219 ntBASIC23.15■■□□□ 1.3
USP47Q96K76 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
USP47Q96K76 IGHV3-62-201ENST00000520057 340 ntBASIC23.15■■□□□ 1.3
USP47Q96K76 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
USP47Q96K76 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP47Q96K76 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
USP47Q96K76 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC23.15■■□□□ 1.3
USP47Q96K76 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP47Q96K76 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP47Q96K76 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
USP47Q96K76 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC23.15■■□□□ 1.3
USP47Q96K76 GOLGA2P9-201ENST00000596977 1937 ntBASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms