Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 SCARNA2-201ENST00000458748 420 ntBASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 TPM1-226ENST00000560959 925 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 NKAPP1-205ENST00000585790 367 ntBASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 AC138894.3-201ENST00000603787 634 ntBASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 ME2P1-201ENST00000426028 1970 ntBASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 DOC2GP-204ENST00000639052 2548 ntBASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC54Q8NEL0 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC54Q8NEL0 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC54Q8NEL0 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC54Q8NEL0 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC54Q8NEL0 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.58□□□□□ -0.07
CCDC54Q8NEL0 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC54Q8NEL0 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC54Q8NEL0 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC54Q8NEL0 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 ARTN-206ENST00000472435 402 ntTSL 3 BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 AC064862.7-201ENST00000604520 867 ntBASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 AL355877.3-201ENST00000622820 899 ntBASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC54Q8NEL0 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 TPM1-218ENST00000559281 851 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 MPDU1-223ENST00000582151 728 ntBASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 MTDHP3-201ENST00000594186 672 ntBASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 AC004706.3-202ENST00000621574 984 ntBASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC54Q8NEL0 PAN3-AS1-201ENST00000563843 1351 ntBASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms