Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
LDB1Q86U70 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
LDB1Q86U70 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.65■□□□□ 0.26
LDB1Q86U70 VN2R19P-201ENST00000442399 1052 ntBASIC16.65■□□□□ 0.26
LDB1Q86U70 FAM185BP-201ENST00000443595 716 ntBASIC16.65■□□□□ 0.26
LDB1Q86U70 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.65■□□□□ 0.26
LDB1Q86U70 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.65■□□□□ 0.26
LDB1Q86U70 AC087641.1-201ENST00000557561 1021 ntBASIC16.65■□□□□ 0.26
LDB1Q86U70 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.65■□□□□ 0.26
LDB1Q86U70 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.65■□□□□ 0.26
LDB1Q86U70 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.65■□□□□ 0.26
LDB1Q86U70 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
LDB1Q86U70 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
LDB1Q86U70 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.65■□□□□ 0.26
LDB1Q86U70 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.65■□□□□ 0.26
LDB1Q86U70 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
LDB1Q86U70 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LDB1Q86U70 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.65■□□□□ 0.26
LDB1Q86U70 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.65■□□□□ 0.26
LDB1Q86U70 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
LDB1Q86U70 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.65■□□□□ 0.26
LDB1Q86U70 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.65■□□□□ 0.26
LDB1Q86U70 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDB1Q86U70 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.64■□□□□ 0.26
LDB1Q86U70 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.64■□□□□ 0.25
LDB1Q86U70 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LDB1Q86U70 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LDB1Q86U70 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.64■□□□□ 0.25
LDB1Q86U70 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.64■□□□□ 0.25
LDB1Q86U70 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.64■□□□□ 0.25
LDB1Q86U70 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.64■□□□□ 0.25
LDB1Q86U70 FDX1P1-201ENST00000449115 551 ntBASIC16.64■□□□□ 0.25
LDB1Q86U70 CXCL1P1-201ENST00000502804 216 ntBASIC16.64■□□□□ 0.25
LDB1Q86U70 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.64■□□□□ 0.25
LDB1Q86U70 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.64■□□□□ 0.25
LDB1Q86U70 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.64■□□□□ 0.25
LDB1Q86U70 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.64■□□□□ 0.25
LDB1Q86U70 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.64■□□□□ 0.25
LDB1Q86U70 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.64■□□□□ 0.25
LDB1Q86U70 GGT3P-204ENST00000453783 1664 ntBASIC16.64■□□□□ 0.25
LDB1Q86U70 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.64■□□□□ 0.25
LDB1Q86U70 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LDB1Q86U70 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LDB1Q86U70 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LDB1Q86U70 ME2P1-201ENST00000426028 1970 ntBASIC16.64■□□□□ 0.25
LDB1Q86U70 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB1Q86U70 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LDB1Q86U70 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDB1Q86U70 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDB1Q86U70 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDB1Q86U70 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDB1Q86U70 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.63■□□□□ 0.25
LDB1Q86U70 AC104109.2-201ENST00000602919 1418 ntBASIC16.63■□□□□ 0.25
LDB1Q86U70 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDB1Q86U70 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LDB1Q86U70 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDB1Q86U70 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.63■□□□□ 0.25
LDB1Q86U70 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.63■□□□□ 0.25
LDB1Q86U70 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
LDB1Q86U70 CRYGEP-201ENST00000412192 528 ntBASIC16.63■□□□□ 0.25
LDB1Q86U70 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LDB1Q86U70 PRSS29P-201ENST00000440800 595 ntBASIC16.63■□□□□ 0.25
LDB1Q86U70 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.63■□□□□ 0.25
LDB1Q86U70 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.63■□□□□ 0.25
LDB1Q86U70 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.63■□□□□ 0.25
LDB1Q86U70 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.63■□□□□ 0.25
LDB1Q86U70 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms