Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN1P58418 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC14.92□□□□□ -0.02
CLRN1P58418 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CLRN1P58418 PMS2P1-201ENST00000431037 1228 ntBASIC14.92□□□□□ -0.02
CLRN1P58418 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC14.92□□□□□ -0.02
CLRN1P58418 AC087641.1-201ENST00000557561 1021 ntBASIC14.92□□□□□ -0.02
CLRN1P58418 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC14.92□□□□□ -0.02
CLRN1P58418 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC14.92□□□□□ -0.02
CLRN1P58418 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.92□□□□□ -0.02
CLRN1P58418 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC14.92□□□□□ -0.02
CLRN1P58418 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CLRN1P58418 AC010654.1-201ENST00000615722 808 ntBASIC14.92□□□□□ -0.02
CLRN1P58418 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC14.92□□□□□ -0.02
CLRN1P58418 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN1P58418 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.92□□□□□ -0.02
CLRN1P58418 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN1P58418 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
CLRN1P58418 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN1P58418 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN1P58418 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN1P58418 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN1P58418 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
CLRN1P58418 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
CLRN1P58418 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.92□□□□□ -0.02
CLRN1P58418 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN1P58418 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC14.92□□□□□ -0.02
CLRN1P58418 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN1P58418 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN1P58418 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN1P58418 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.92□□□□□ -0.02
CLRN1P58418 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC14.92□□□□□ -0.02
CLRN1P58418 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN1P58418 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 HCG4-201ENST00000418983 998 ntBASIC14.91□□□□□ -0.02
CLRN1P58418 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 STARD13-205ENST00000439831 945 ntTSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 PENK-208ENST00000523051 772 ntTSL 5 BASIC14.91□□□□□ -0.02
CLRN1P58418 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC14.91□□□□□ -0.02
CLRN1P58418 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 LITAF-211ENST00000572255 516 ntTSL 4 BASIC14.91□□□□□ -0.02
CLRN1P58418 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
CLRN1P58418 MIR4492-201ENST00000581627 80 ntBASIC14.91□□□□□ -0.02
CLRN1P58418 CYP2A7P1-201ENST00000595391 815 ntBASIC14.91□□□□□ -0.02
CLRN1P58418 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC14.91□□□□□ -0.02
CLRN1P58418 AC116407.3-201ENST00000623905 1129 ntBASIC14.91□□□□□ -0.02
CLRN1P58418 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.91□□□□□ -0.02
CLRN1P58418 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.91□□□□□ -0.02
CLRN1P58418 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC14.91□□□□□ -0.02
CLRN1P58418 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN1P58418 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CLRN1P58418 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN1P58418 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.9□□□□□ -0.02
CLRN1P58418 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN1P58418 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.9□□□□□ -0.02
CLRN1P58418 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN1P58418 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
CLRN1P58418 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN1P58418 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN1P58418 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.9□□□□□ -0.02
CLRN1P58418 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CLRN1P58418 CYP51A1P2-201ENST00000419457 1499 ntBASIC14.9□□□□□ -0.02
CLRN1P58418 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
CLRN1P58418 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN1P58418 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC14.9□□□□□ -0.02
CLRN1P58418 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN1P58418 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
CLRN1P58418 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN1P58418 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN1P58418 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms