Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HDAC4P56524 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HDAC4P56524 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HDAC4P56524 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.42■□□□□ 0.38
HDAC4P56524 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.42■□□□□ 0.38
HDAC4P56524 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.42■□□□□ 0.38
HDAC4P56524 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.42■□□□□ 0.38
HDAC4P56524 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HDAC4P56524 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.42■□□□□ 0.38
HDAC4P56524 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
HDAC4P56524 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
HDAC4P56524 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HDAC4P56524 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.41■□□□□ 0.38
HDAC4P56524 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
HDAC4P56524 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HDAC4P56524 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
HDAC4P56524 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HDAC4P56524 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
HDAC4P56524 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.41■□□□□ 0.38
HDAC4P56524 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.41■□□□□ 0.38
HDAC4P56524 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.41■□□□□ 0.38
HDAC4P56524 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.41■□□□□ 0.38
HDAC4P56524 AC140113.2-201ENST00000604370 208 ntBASIC17.41■□□□□ 0.38
HDAC4P56524 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HDAC4P56524 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HDAC4P56524 PKD1P5-201ENST00000532415 10291 ntBASIC17.41■□□□□ 0.38
HDAC4P56524 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
HDAC4P56524 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HDAC4P56524 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HDAC4P56524 AC008894.3-201ENST00000624324 3103 ntBASIC17.41■□□□□ 0.38
HDAC4P56524 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HDAC4P56524 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.4■□□□□ 0.38
HDAC4P56524 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HDAC4P56524 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
HDAC4P56524 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.4■□□□□ 0.38
HDAC4P56524 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.4■□□□□ 0.38
HDAC4P56524 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.4■□□□□ 0.38
HDAC4P56524 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.4■□□□□ 0.38
HDAC4P56524 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.4■□□□□ 0.38
HDAC4P56524 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.4■□□□□ 0.38
HDAC4P56524 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.4■□□□□ 0.38
HDAC4P56524 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.4■□□□□ 0.38
HDAC4P56524 AL031432.2-201ENST00000566714 459 ntBASIC17.4■□□□□ 0.38
HDAC4P56524 AL928711.1-201ENST00000570165 459 ntBASIC17.4■□□□□ 0.38
HDAC4P56524 AC027601.4-201ENST00000611259 610 ntBASIC17.4■□□□□ 0.38
HDAC4P56524 AC004877.2-201ENST00000623941 599 ntBASIC17.4■□□□□ 0.38
HDAC4P56524 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
HDAC4P56524 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
HDAC4P56524 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HDAC4P56524 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HDAC4P56524 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.4■□□□□ 0.38
HDAC4P56524 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HDAC4P56524 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms