Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.32■□□□□ 0.68
SCN4AP35499 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN4AP35499 KRT8P37-201ENST00000451609 1420 ntBASIC19.32■□□□□ 0.68
SCN4AP35499 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN4AP35499 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN4AP35499 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN4AP35499 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN4AP35499 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.31■□□□□ 0.68
SCN4AP35499 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
SCN4AP35499 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCN4AP35499 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN4AP35499 BAATP1-201ENST00000412284 1225 ntBASIC19.31■□□□□ 0.68
SCN4AP35499 EEF1DP4-201ENST00000446006 880 ntBASIC19.31■□□□□ 0.68
SCN4AP35499 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC19.31■□□□□ 0.68
SCN4AP35499 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCN4AP35499 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC19.31■□□□□ 0.68
SCN4AP35499 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
SCN4AP35499 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC19.31■□□□□ 0.68
SCN4AP35499 ATF5-205ENST00000600336 682 ntTSL 2 BASIC19.31■□□□□ 0.68
SCN4AP35499 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN4AP35499 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SCN4AP35499 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN4AP35499 AC004408.2-201ENST00000623613 2777 ntBASIC19.31■□□□□ 0.68
SCN4AP35499 AL136982.4-201ENST00000437689 1740 ntBASIC19.31■□□□□ 0.68
SCN4AP35499 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCN4AP35499 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN4AP35499 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SCN4AP35499 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SCN4AP35499 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC19.3■□□□□ 0.68
SCN4AP35499 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC19.3■□□□□ 0.68
SCN4AP35499 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
SCN4AP35499 AC104306.2-201ENST00000451877 341 ntBASIC19.3■□□□□ 0.68
SCN4AP35499 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC19.3■□□□□ 0.68
SCN4AP35499 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC19.3■□□□□ 0.68
SCN4AP35499 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC19.3■□□□□ 0.68
SCN4AP35499 AC016629.1-201ENST00000596579 586 ntBASIC19.3■□□□□ 0.68
SCN4AP35499 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC19.3■□□□□ 0.68
SCN4AP35499 HADH-212ENST00000638621 741 ntTSL 5 BASIC19.3■□□□□ 0.68
SCN4AP35499 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.3■□□□□ 0.68
SCN4AP35499 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.3■□□□□ 0.68
SCN4AP35499 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SCN4AP35499 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SCN4AP35499 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 AC012317.2-201ENST00000623305 2251 ntBASIC19.3■□□□□ 0.68
SCN4AP35499 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SCN4AP35499 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
SCN4AP35499 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC19.3■□□□□ 0.68
SCN4AP35499 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.3■□□□□ 0.68
SCN4AP35499 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC19.3■□□□□ 0.68
SCN4AP35499 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 HINT2P1-201ENST00000419438 481 ntBASIC19.3■□□□□ 0.68
SCN4AP35499 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN4AP35499 FAM86LP-201ENST00000478302 853 ntBASIC19.3■□□□□ 0.68
SCN4AP35499 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC19.3■□□□□ 0.68
SCN4AP35499 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC19.3■□□□□ 0.68
SCN4AP35499 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC19.3■□□□□ 0.68
SCN4AP35499 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.29■□□□□ 0.68
SCN4AP35499 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.29■□□□□ 0.68
SCN4AP35499 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.29■□□□□ 0.68
SCN4AP35499 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.29■□□□□ 0.68
SCN4AP35499 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC19.29■□□□□ 0.68
SCN4AP35499 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.29■□□□□ 0.68
SCN4AP35499 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC19.29■□□□□ 0.68
SCN4AP35499 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
SCN4AP35499 AC079328.1-201ENST00000560358 952 ntBASIC19.29■□□□□ 0.68
SCN4AP35499 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SCN4AP35499 SPIB-207ENST00000597855 564 ntTSL 4 BASIC19.29■□□□□ 0.68
SCN4AP35499 KC6-205ENST00000599934 556 ntTSL 4 BASIC19.29■□□□□ 0.68
SCN4AP35499 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 AL022328.3-201ENST00000607943 679 ntBASIC19.29■□□□□ 0.68
SCN4AP35499 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC19.29■□□□□ 0.68
SCN4AP35499 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SCN4AP35499 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.28■□□□□ 0.68
SCN4AP35499 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms