Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.89■□□□□ 0.13
SDC1P18827 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDC1P18827 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.89■□□□□ 0.13
SDC1P18827 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SDC1P18827 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.89■□□□□ 0.13
SDC1P18827 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDC1P18827 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDC1P18827 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
SDC1P18827 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SDC1P18827 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.88■□□□□ 0.13
SDC1P18827 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
SDC1P18827 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SDC1P18827 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SDC1P18827 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
SDC1P18827 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
SDC1P18827 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.88■□□□□ 0.13
SDC1P18827 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.88■□□□□ 0.13
SDC1P18827 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SDC1P18827 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
SDC1P18827 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.88■□□□□ 0.13
SDC1P18827 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 AC012640.2-201ENST00000561606 901 ntBASIC15.88■□□□□ 0.13
SDC1P18827 AL356488.2-201ENST00000602755 427 ntBASIC15.88■□□□□ 0.13
SDC1P18827 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SDC1P18827 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.88■□□□□ 0.13
SDC1P18827 AP001350.2-201ENST00000625104 1094 ntBASIC15.88■□□□□ 0.13
SDC1P18827 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
SDC1P18827 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SDC1P18827 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SDC1P18827 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SDC1P18827 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SDC1P18827 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SDC1P18827 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
SDC1P18827 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.88■□□□□ 0.13
SDC1P18827 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SDC1P18827 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 AC006449.6-201ENST00000612330 2296 ntBASIC15.88■□□□□ 0.13
SDC1P18827 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SDC1P18827 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SDC1P18827 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.88■□□□□ 0.13
SDC1P18827 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SDC1P18827 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.87■□□□□ 0.13
SDC1P18827 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SDC1P18827 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
SDC1P18827 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.87■□□□□ 0.13
SDC1P18827 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.87■□□□□ 0.13
SDC1P18827 AP002414.3-201ENST00000589352 1468 ntBASIC15.87■□□□□ 0.13
SDC1P18827 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
SDC1P18827 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.87■□□□□ 0.13
SDC1P18827 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC15.87■□□□□ 0.13
SDC1P18827 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.87■□□□□ 0.13
SDC1P18827 EMBP1-201ENST00000458200 901 ntBASIC15.87■□□□□ 0.13
SDC1P18827 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.87■□□□□ 0.13
SDC1P18827 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.87■□□□□ 0.13
SDC1P18827 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.87■□□□□ 0.13
SDC1P18827 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.87■□□□□ 0.13
SDC1P18827 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.87■□□□□ 0.13
SDC1P18827 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SDC1P18827 AC105339.3-201ENST00000560043 636 ntBASIC15.87■□□□□ 0.13
SDC1P18827 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.87■□□□□ 0.13
SDC1P18827 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.87■□□□□ 0.13
SDC1P18827 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.87■□□□□ 0.13
SDC1P18827 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.87■□□□□ 0.13
SDC1P18827 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.87■□□□□ 0.13
SDC1P18827 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.87■□□□□ 0.13
SDC1P18827 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SDC1P18827 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.87■□□□□ 0.13
SDC1P18827 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.87■□□□□ 0.13
SDC1P18827 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.87■□□□□ 0.13
SDC1P18827 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.86■□□□□ 0.13
SDC1P18827 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SDC1P18827 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.86■□□□□ 0.13
SDC1P18827 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
SDC1P18827 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms