Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 MIR574-201ENST00000385209 96 ntBASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 MED16-214ENST00000617672 554 ntTSL 5 BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SMC4Q9NTJ3 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 AC092919.2-201ENST00000623631 1645 ntBASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 POLD2P1-201ENST00000511220 997 ntBASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 PDPK2P-202ENST00000562415 1191 ntBASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 AL671883.3-201ENST00000603274 991 ntBASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 GPAA1P2-202ENST00000606848 1787 ntBASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC21.38■■□□□ 1.01
SMC4Q9NTJ3 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 PCDH8P1-201ENST00000428983 2773 ntBASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 AC092364.2-201ENST00000596710 2692 ntBASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 KRT18P58-201ENST00000527480 1120 ntBASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC4Q9NTJ3 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 AC023274.1-201ENST00000418278 595 ntBASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 HNRNPA1P28-201ENST00000424481 961 ntBASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 SMN2-210ENST00000511812 867 ntTSL 2 BASIC21.36■■□□□ 1.01
SMC4Q9NTJ3 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms