Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 CICP6-201ENST00000457191 2729 ntBASIC17.26■□□□□ 0.35
PCDH9Q9HC56 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 AC116407.3-201ENST00000623905 1129 ntBASIC17.26■□□□□ 0.35
PCDH9Q9HC56 AC005593.1-201ENST00000624894 515 ntBASIC17.26■□□□□ 0.35
PCDH9Q9HC56 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 PI4KAP1-204ENST00000612579 1703 ntBASIC17.26■□□□□ 0.35
PCDH9Q9HC56 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 AC007950.2-201ENST00000615045 2347 ntBASIC17.25■□□□□ 0.35
PCDH9Q9HC56 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 AC079776.4-201ENST00000511039 504 ntBASIC17.25■□□□□ 0.35
PCDH9Q9HC56 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 MIR4492-201ENST00000581627 80 ntBASIC17.25■□□□□ 0.35
PCDH9Q9HC56 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.25■□□□□ 0.35
PCDH9Q9HC56 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDH9Q9HC56 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 AL671710.1-201ENST00000610245 2349 ntBASIC17.24■□□□□ 0.35
PCDH9Q9HC56 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 AC098831.1-202ENST00000438821 336 ntBASIC17.24■□□□□ 0.35
PCDH9Q9HC56 MPDU1-223ENST00000582151 728 ntBASIC17.24■□□□□ 0.35
PCDH9Q9HC56 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 AC117500.6-201ENST00000624871 588 ntBASIC17.24■□□□□ 0.35
PCDH9Q9HC56 AF228730.7-201ENST00000641842 219 ntBASIC17.24■□□□□ 0.35
PCDH9Q9HC56 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 AL162727.3-201ENST00000635661 2787 ntBASIC17.24■□□□□ 0.35
PCDH9Q9HC56 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 AL512652.2-201ENST00000625156 1716 ntBASIC17.24■□□□□ 0.35
PCDH9Q9HC56 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms