Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 RARRES2P5-201ENST00000564013 466 ntBASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 AC025048.3-201ENST00000590609 569 ntBASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 AC005702.4-201ENST00000618393 416 ntBASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF541Q9H0D2 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 LBX2-201ENST00000341396 886 ntTSL 3 BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 MIR5189-201ENST00000577370 114 ntBASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 AC013467.2-201ENST00000605472 835 ntBASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
ZNF541Q9H0D2 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 AC005229.1-201ENST00000392885 409 ntBASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 USB1-202ENST00000423271 1217 ntTSL 2 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 CSF2RBP1-201ENST00000447905 391 ntBASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF541Q9H0D2 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms