Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 PRYP5-201ENST00000451909 266 ntBASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 FGFR3P6-201ENST00000457012 610 ntBASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
TRIM56Q9BRZ2 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 TSPY19P-201ENST00000418461 509 ntBASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 TSPY18P-201ENST00000441642 509 ntBASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC17.07■□□□□ 0.32
TRIM56Q9BRZ2 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 NCF1C-201ENST00000438382 1427 ntBASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 AL355877.3-201ENST00000622820 899 ntBASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms