Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 BCAR1-209ENST00000546196 1340 ntBASIC12.9□□□□□ -0.34
CCDC140Q96MF4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 FALEC-201ENST00000416894 566 ntTSL 3 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 AL591424.1-201ENST00000442569 1213 ntBASIC12.9□□□□□ -0.34
CCDC140Q96MF4 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 KRT19P2-202ENST00000557173 1012 ntBASIC12.9□□□□□ -0.34
CCDC140Q96MF4 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 MIR3909-201ENST00000579518 119 ntBASIC12.9□□□□□ -0.34
CCDC140Q96MF4 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 AC027601.4-201ENST00000611259 610 ntBASIC12.9□□□□□ -0.34
CCDC140Q96MF4 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
CCDC140Q96MF4 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
CCDC140Q96MF4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.35
CCDC140Q96MF4 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.35
CCDC140Q96MF4 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.35
CCDC140Q96MF4 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 AC025580.3-201ENST00000617932 1424 ntBASIC12.89□□□□□ -0.35
CCDC140Q96MF4 AC092364.2-201ENST00000596710 2692 ntBASIC12.89□□□□□ -0.35
CCDC140Q96MF4 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 AL022342.1-201ENST00000400363 863 ntBASIC12.89□□□□□ -0.35
CCDC140Q96MF4 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 RNA5SP416-201ENST00000516838 111 ntBASIC12.89□□□□□ -0.35
CCDC140Q96MF4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 RPS15-207ENST00000591032 550 ntTSL 3 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 RPS15-212ENST00000593052 629 ntTSL 2 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 FAM197Y3-203ENST00000618346 717 ntBASIC12.89□□□□□ -0.35
CCDC140Q96MF4 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CCDC140Q96MF4 PCGF3-213ENST00000620529 1899 ntBASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 160.3 ms