Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ERCC4Q92889 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.99■□□□□ 0.63
ERCC4Q92889 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.99■□□□□ 0.63
ERCC4Q92889 FOSL1P1-201ENST00000511041 816 ntBASIC18.99■□□□□ 0.63
ERCC4Q92889 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.99■□□□□ 0.63
ERCC4Q92889 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.99■□□□□ 0.63
ERCC4Q92889 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.99■□□□□ 0.63
ERCC4Q92889 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.99■□□□□ 0.63
ERCC4Q92889 AL353135.1-201ENST00000606729 504 ntBASIC18.99■□□□□ 0.63
ERCC4Q92889 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ERCC4Q92889 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ERCC4Q92889 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ERCC4Q92889 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
ERCC4Q92889 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.99■□□□□ 0.63
ERCC4Q92889 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.99■□□□□ 0.63
ERCC4Q92889 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC18.99■□□□□ 0.63
ERCC4Q92889 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ERCC4Q92889 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ERCC4Q92889 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.99■□□□□ 0.63
ERCC4Q92889 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
ERCC4Q92889 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
ERCC4Q92889 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.99■□□□□ 0.63
ERCC4Q92889 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
ERCC4Q92889 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ERCC4Q92889 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ERCC4Q92889 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
ERCC4Q92889 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC18.98■□□□□ 0.63
ERCC4Q92889 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
ERCC4Q92889 AC006538.1-201ENST00000567905 1585 ntBASIC18.98■□□□□ 0.63
ERCC4Q92889 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.98■□□□□ 0.63
ERCC4Q92889 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
ERCC4Q92889 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.98■□□□□ 0.63
ERCC4Q92889 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
ERCC4Q92889 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC18.98■□□□□ 0.63
ERCC4Q92889 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.98■□□□□ 0.63
ERCC4Q92889 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.98■□□□□ 0.63
ERCC4Q92889 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.98■□□□□ 0.63
ERCC4Q92889 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ERCC4Q92889 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.98■□□□□ 0.63
ERCC4Q92889 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ERCC4Q92889 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ERCC4Q92889 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.98■□□□□ 0.63
ERCC4Q92889 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
ERCC4Q92889 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ERCC4Q92889 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.98■□□□□ 0.63
ERCC4Q92889 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.98■□□□□ 0.63
ERCC4Q92889 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ERCC4Q92889 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.98■□□□□ 0.63
ERCC4Q92889 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ERCC4Q92889 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ERCC4Q92889 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
ERCC4Q92889 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.98■□□□□ 0.63
ERCC4Q92889 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.98■□□□□ 0.63
ERCC4Q92889 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ERCC4Q92889 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
ERCC4Q92889 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
ERCC4Q92889 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.97■□□□□ 0.63
ERCC4Q92889 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.97■□□□□ 0.63
ERCC4Q92889 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.97■□□□□ 0.63
ERCC4Q92889 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 SNX33P1-201ENST00000592116 1762 ntBASIC18.97■□□□□ 0.63
ERCC4Q92889 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
ERCC4Q92889 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.97■□□□□ 0.63
ERCC4Q92889 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.97■□□□□ 0.63
ERCC4Q92889 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.97■□□□□ 0.63
ERCC4Q92889 AP002490.2-201ENST00000524791 560 ntBASIC18.97■□□□□ 0.63
ERCC4Q92889 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
ERCC4Q92889 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.97■□□□□ 0.63
ERCC4Q92889 NKAPP1-205ENST00000585790 367 ntBASIC18.97■□□□□ 0.63
ERCC4Q92889 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.97■□□□□ 0.63
ERCC4Q92889 TERC-201ENST00000602385 541 ntBASIC18.97■□□□□ 0.63
ERCC4Q92889 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC18.97■□□□□ 0.63
ERCC4Q92889 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC18.97■□□□□ 0.63
ERCC4Q92889 KRT8P49-201ENST00000604166 1432 ntBASIC18.97■□□□□ 0.63
ERCC4Q92889 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.97■□□□□ 0.63
ERCC4Q92889 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ERCC4Q92889 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.97■□□□□ 0.63
ERCC4Q92889 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ERCC4Q92889 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
ERCC4Q92889 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms