Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
IRX4P78413 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
IRX4P78413 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.43■□□□□ 0.38
IRX4P78413 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
IRX4P78413 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
IRX4P78413 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
IRX4P78413 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.42■□□□□ 0.38
IRX4P78413 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.42■□□□□ 0.38
IRX4P78413 AC016396.2-201ENST00000562575 1417 ntBASIC17.42■□□□□ 0.38
IRX4P78413 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.42■□□□□ 0.38
IRX4P78413 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.42■□□□□ 0.38
IRX4P78413 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.42■□□□□ 0.38
IRX4P78413 AC096633.1-201ENST00000422446 749 ntBASIC17.42■□□□□ 0.38
IRX4P78413 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 HCG4B-203ENST00000450128 991 ntBASIC17.42■□□□□ 0.38
IRX4P78413 AC108073.2-201ENST00000464002 357 ntBASIC17.42■□□□□ 0.38
IRX4P78413 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
IRX4P78413 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.42■□□□□ 0.38
IRX4P78413 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.42■□□□□ 0.38
IRX4P78413 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.42■□□□□ 0.38
IRX4P78413 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.42■□□□□ 0.38
IRX4P78413 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.42■□□□□ 0.38
IRX4P78413 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
IRX4P78413 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
IRX4P78413 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
IRX4P78413 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC17.42■□□□□ 0.38
IRX4P78413 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
IRX4P78413 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
IRX4P78413 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.41■□□□□ 0.38
IRX4P78413 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.41■□□□□ 0.38
IRX4P78413 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.41■□□□□ 0.38
IRX4P78413 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
IRX4P78413 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.41■□□□□ 0.38
IRX4P78413 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
IRX4P78413 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.41■□□□□ 0.38
IRX4P78413 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 ELK2BP-201ENST00000415014 1224 ntBASIC17.41■□□□□ 0.38
IRX4P78413 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.41■□□□□ 0.38
IRX4P78413 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.41■□□□□ 0.38
IRX4P78413 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
IRX4P78413 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.41■□□□□ 0.38
IRX4P78413 AC073592.5-201ENST00000624854 528 ntBASIC17.41■□□□□ 0.38
IRX4P78413 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.41■□□□□ 0.38
IRX4P78413 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
IRX4P78413 AC011270.2-201ENST00000624293 2550 ntBASIC17.41■□□□□ 0.38
IRX4P78413 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
IRX4P78413 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
IRX4P78413 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.41■□□□□ 0.38
IRX4P78413 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
IRX4P78413 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
IRX4P78413 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
IRX4P78413 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
IRX4P78413 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.4■□□□□ 0.38
IRX4P78413 AC046185.3-201ENST00000623228 1824 ntBASIC17.4■□□□□ 0.38
IRX4P78413 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
IRX4P78413 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
IRX4P78413 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
IRX4P78413 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
IRX4P78413 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
IRX4P78413 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
IRX4P78413 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
IRX4P78413 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
IRX4P78413 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
IRX4P78413 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
IRX4P78413 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
IRX4P78413 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.4■□□□□ 0.38
IRX4P78413 AL035633.1-201ENST00000406139 838 ntBASIC17.4■□□□□ 0.38
IRX4P78413 AC103564.2-201ENST00000432853 1299 ntBASIC17.4■□□□□ 0.38
IRX4P78413 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms