Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 NABP1-203ENST00000409510 843 ntTSL 5 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 AL353135.1-201ENST00000606729 504 ntBASIC12.78□□□□□ -0.36
HLA-DMBP28068 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC12.78□□□□□ -0.36
HLA-DMBP28068 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
HLA-DMBP28068 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
HLA-DMBP28068 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HLA-DMBP28068 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
HLA-DMBP28068 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
HLA-DMBP28068 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
HLA-DMBP28068 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
HLA-DMBP28068 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HLA-DMBP28068 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HLA-DMBP28068 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HLA-DMBP28068 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DMBP28068 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DMBP28068 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DMBP28068 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DMBP28068 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 COX5A-202ENST00000562233 441 ntTSL 3 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 WDR88-203ENST00000592765 651 ntTSL 5 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 AL031008.1-201ENST00000619963 541 ntBASIC12.77□□□□□ -0.37
HLA-DMBP28068 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DMBP28068 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DMBP28068 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DMBP28068 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DMBP28068 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DMBP28068 ABR-203ENST00000536794 2213 ntTSL 2 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 FRMD6-AS1-201ENST00000617151 2229 ntBASIC12.77□□□□□ -0.37
HLA-DMBP28068 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DMBP28068 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DMBP28068 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DMBP28068 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
HLA-DMBP28068 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
HLA-DMBP28068 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DMBP28068 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms