Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL5A1P20908 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.11
COL5A1P20908 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL5A1P20908 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
COL5A1P20908 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.77■□□□□ 0.11
COL5A1P20908 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.77■□□□□ 0.11
COL5A1P20908 AC234783.1-201ENST00000441761 496 ntBASIC15.77■□□□□ 0.11
COL5A1P20908 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.77■□□□□ 0.11
COL5A1P20908 ELK1P1-201ENST00000485699 580 ntBASIC15.77■□□□□ 0.11
COL5A1P20908 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.77■□□□□ 0.11
COL5A1P20908 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL5A1P20908 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL5A1P20908 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
COL5A1P20908 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL5A1P20908 AP001094.4-201ENST00000579008 2176 ntBASIC15.77■□□□□ 0.11
COL5A1P20908 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL5A1P20908 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL5A1P20908 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL5A1P20908 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
COL5A1P20908 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL5A1P20908 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.77■□□□□ 0.11
COL5A1P20908 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL5A1P20908 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC15.76■□□□□ 0.11
COL5A1P20908 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.76■□□□□ 0.11
COL5A1P20908 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 AC098850.1-201ENST00000419919 790 ntBASIC15.76■□□□□ 0.11
COL5A1P20908 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.76■□□□□ 0.11
COL5A1P20908 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 KRT223P-202ENST00000449164 1292 ntBASIC15.76■□□□□ 0.11
COL5A1P20908 USP32P1-208ENST00000506594 1164 ntBASIC15.76■□□□□ 0.11
COL5A1P20908 AC123567.1-201ENST00000548294 1261 ntBASIC15.76■□□□□ 0.11
COL5A1P20908 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
COL5A1P20908 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.76■□□□□ 0.11
COL5A1P20908 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.76■□□□□ 0.11
COL5A1P20908 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.76■□□□□ 0.11
COL5A1P20908 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
COL5A1P20908 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
COL5A1P20908 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
COL5A1P20908 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
COL5A1P20908 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
COL5A1P20908 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL5A1P20908 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
COL5A1P20908 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.75■□□□□ 0.11
COL5A1P20908 MEP1AP4-201ENST00000423244 1087 ntBASIC15.75■□□□□ 0.11
COL5A1P20908 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.75■□□□□ 0.11
COL5A1P20908 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.75■□□□□ 0.11
COL5A1P20908 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.75■□□□□ 0.11
COL5A1P20908 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC15.75■□□□□ 0.11
COL5A1P20908 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.75■□□□□ 0.11
COL5A1P20908 AC093726.1-201ENST00000608064 963 ntBASIC15.75■□□□□ 0.11
COL5A1P20908 AC020765.3-201ENST00000613051 740 ntBASIC15.75■□□□□ 0.11
COL5A1P20908 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
COL5A1P20908 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.75■□□□□ 0.11
COL5A1P20908 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
COL5A1P20908 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.75■□□□□ 0.11
COL5A1P20908 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.75■□□□□ 0.11
COL5A1P20908 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.75■□□□□ 0.11
COL5A1P20908 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.75■□□□□ 0.11
COL5A1P20908 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
COL5A1P20908 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.75■□□□□ 0.11
COL5A1P20908 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.75■□□□□ 0.11
COL5A1P20908 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.75■□□□□ 0.11
COL5A1P20908 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC15.75■□□□□ 0.11
COL5A1P20908 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.75■□□□□ 0.11
COL5A1P20908 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.75■□□□□ 0.11
COL5A1P20908 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL5A1P20908 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC15.75■□□□□ 0.11
COL5A1P20908 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
COL5A1P20908 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL5A1P20908 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL5A1P20908 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.74■□□□□ 0.11
COL5A1P20908 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL5A1P20908 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms