Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AL391069.4-201ENST00000609583 481 ntBASIC17■□□□□ 0.31
VCANP13611 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
VCANP13611 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
VCANP13611 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 AL133373.2-201ENST00000623187 2828 ntBASIC17■□□□□ 0.31
VCANP13611 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17■□□□□ 0.31
VCANP13611 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17■□□□□ 0.31
VCANP13611 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
VCANP13611 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17■□□□□ 0.31
VCANP13611 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 FTLP10-202ENST00000505798 471 ntBASIC17■□□□□ 0.31
VCANP13611 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17■□□□□ 0.31
VCANP13611 AP001505.2-201ENST00000616815 443 ntBASIC17■□□□□ 0.31
VCANP13611 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
VCANP13611 AC012313.1-201ENST00000593393 3059 ntBASIC17■□□□□ 0.31
VCANP13611 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VCANP13611 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
VCANP13611 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VCANP13611 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VCANP13611 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VCANP13611 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VCANP13611 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.99■□□□□ 0.31
VCANP13611 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
VCANP13611 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC16.99■□□□□ 0.31
VCANP13611 CSH2-202ENST00000345366 598 ntTSL 5 BASIC16.99■□□□□ 0.31
VCANP13611 AC069218.1-201ENST00000435269 762 ntBASIC16.99■□□□□ 0.31
VCANP13611 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VCANP13611 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.99■□□□□ 0.31
VCANP13611 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VCANP13611 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VCANP13611 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
VCANP13611 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
VCANP13611 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VCANP13611 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.99■□□□□ 0.31
VCANP13611 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
VCANP13611 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VCANP13611 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC16.99■□□□□ 0.31
VCANP13611 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC16.99■□□□□ 0.31
VCANP13611 AL162726.2-201ENST00000438986 1017 ntBASIC16.99■□□□□ 0.31
VCANP13611 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.99■□□□□ 0.31
VCANP13611 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.99■□□□□ 0.31
VCANP13611 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC16.99■□□□□ 0.31
VCANP13611 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.99■□□□□ 0.31
VCANP13611 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VCANP13611 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VCANP13611 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC16.98■□□□□ 0.31
VCANP13611 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC16.98■□□□□ 0.31
VCANP13611 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
VCANP13611 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.98■□□□□ 0.31
VCANP13611 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VCANP13611 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VCANP13611 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VCANP13611 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.98■□□□□ 0.31
VCANP13611 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
VCANP13611 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VCANP13611 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
VCANP13611 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.98■□□□□ 0.31
VCANP13611 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
VCANP13611 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VCANP13611 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.98■□□□□ 0.31
VCANP13611 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VCANP13611 LINC00895-201ENST00000629028 1637 ntBASIC16.98■□□□□ 0.31
VCANP13611 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.98■□□□□ 0.31
VCANP13611 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC16.98■□□□□ 0.31
VCANP13611 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.98■□□□□ 0.31
VCANP13611 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
VCANP13611 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
VCANP13611 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VCANP13611 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VCANP13611 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VCANP13611 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.98■□□□□ 0.31
VCANP13611 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
VCANP13611 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VCANP13611 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
VCANP13611 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
VCANP13611 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
VCANP13611 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.97■□□□□ 0.31
VCANP13611 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
VCANP13611 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.97■□□□□ 0.31
VCANP13611 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.97■□□□□ 0.31
VCANP13611 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
VCANP13611 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC16.97■□□□□ 0.31
VCANP13611 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.97■□□□□ 0.31
VCANP13611 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
VCANP13611 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms