Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL3A1P02461 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL3A1P02461 MIR943-201ENST00000401286 94 ntBASIC21.77■■□□□ 1.08
COL3A1P02461 AC055876.3-201ENST00000431496 288 ntBASIC21.77■■□□□ 1.08
COL3A1P02461 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC21.77■■□□□ 1.08
COL3A1P02461 UGT1A2P-201ENST00000454886 866 ntBASIC21.77■■□□□ 1.08
COL3A1P02461 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC21.77■■□□□ 1.08
COL3A1P02461 AC105021.1-202ENST00000570572 669 ntBASIC21.77■■□□□ 1.08
COL3A1P02461 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC21.77■■□□□ 1.08
COL3A1P02461 MIR4321-201ENST00000592276 80 ntBASIC21.77■■□□□ 1.08
COL3A1P02461 AC138649.4-201ENST00000612222 287 ntBASIC21.77■■□□□ 1.08
COL3A1P02461 TEX28P1-201ENST00000613479 1221 ntBASIC21.77■■□□□ 1.08
COL3A1P02461 TEX28P2-201ENST00000617764 1221 ntBASIC21.77■■□□□ 1.08
COL3A1P02461 AC073592.8-201ENST00000624126 511 ntBASIC21.77■■□□□ 1.08
COL3A1P02461 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL3A1P02461 AC005622.1-201ENST00000636801 1703 ntBASIC21.77■■□□□ 1.08
COL3A1P02461 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC21.77■■□□□ 1.08
COL3A1P02461 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC21.77■■□□□ 1.08
COL3A1P02461 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL3A1P02461 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL3A1P02461 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL3A1P02461 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
COL3A1P02461 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
COL3A1P02461 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL3A1P02461 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL3A1P02461 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL3A1P02461 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
COL3A1P02461 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
COL3A1P02461 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC21.77■■□□□ 1.07
COL3A1P02461 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
COL3A1P02461 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC21.77■■□□□ 1.07
COL3A1P02461 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC21.77■■□□□ 1.07
COL3A1P02461 AL353705.2-201ENST00000428243 662 ntBASIC21.77■■□□□ 1.07
COL3A1P02461 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC21.77■■□□□ 1.07
COL3A1P02461 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.77■■□□□ 1.07
COL3A1P02461 AC097493.3-201ENST00000509725 367 ntBASIC21.77■■□□□ 1.07
COL3A1P02461 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC21.77■■□□□ 1.07
COL3A1P02461 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
COL3A1P02461 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC21.77■■□□□ 1.07
COL3A1P02461 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL3A1P02461 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC21.76■■□□□ 1.07
COL3A1P02461 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL3A1P02461 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL3A1P02461 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC21.76■■□□□ 1.07
COL3A1P02461 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC21.76■■□□□ 1.07
COL3A1P02461 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC21.76■■□□□ 1.07
COL3A1P02461 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC21.76■■□□□ 1.07
COL3A1P02461 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL3A1P02461 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL3A1P02461 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC21.76■■□□□ 1.07
COL3A1P02461 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL3A1P02461 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL3A1P02461 RBM39-205ENST00000397370 612 ntTSL 2 BASIC21.76■■□□□ 1.07
COL3A1P02461 AC245100.5-201ENST00000452108 331 ntBASIC21.76■■□□□ 1.07
COL3A1P02461 AC093214.1-201ENST00000511688 1107 ntBASIC21.76■■□□□ 1.07
COL3A1P02461 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC21.76■■□□□ 1.07
COL3A1P02461 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL3A1P02461 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC21.76■■□□□ 1.07
COL3A1P02461 LITAF-210ENST00000571976 548 ntTSL 2 BASIC21.76■■□□□ 1.07
COL3A1P02461 LITAF-214ENST00000574703 486 ntTSL 2 BASIC21.76■■□□□ 1.07
COL3A1P02461 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC21.76■■□□□ 1.07
COL3A1P02461 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL3A1P02461 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL3A1P02461 GPER1-207ENST00000619052 571 ntTSL 2 BASIC21.76■■□□□ 1.07
COL3A1P02461 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL3A1P02461 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC21.76■■□□□ 1.07
COL3A1P02461 AC100757.3-201ENST00000622361 1406 ntBASIC21.76■■□□□ 1.07
COL3A1P02461 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
COL3A1P02461 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL3A1P02461 AC009053.2-201ENST00000563701 2365 ntBASIC21.75■■□□□ 1.07
COL3A1P02461 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL3A1P02461 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC21.75■■□□□ 1.07
COL3A1P02461 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC21.75■■□□□ 1.07
COL3A1P02461 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL3A1P02461 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL3A1P02461 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL3A1P02461 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL3A1P02461 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL3A1P02461 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
COL3A1P02461 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL3A1P02461 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
COL3A1P02461 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL3A1P02461 EEF1DP4-201ENST00000446006 880 ntBASIC21.75■■□□□ 1.07
COL3A1P02461 AC004890.2-204ENST00000481968 304 ntBASIC21.75■■□□□ 1.07
COL3A1P02461 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC21.75■■□□□ 1.07
COL3A1P02461 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL3A1P02461 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC21.75■■□□□ 1.07
COL3A1P02461 NAA60-208ENST00000570819 833 ntTSL 2 BASIC21.75■■□□□ 1.07
COL3A1P02461 REXO1L8P-201ENST00000604378 1897 ntBASIC21.75■■□□□ 1.07
COL3A1P02461 AL096865.1-201ENST00000606796 927 ntBASIC21.75■■□□□ 1.07
COL3A1P02461 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
COL3A1P02461 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
COL3A1P02461 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL3A1P02461 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
COL3A1P02461 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL3A1P02461 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms