Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
RNF40O75150 AC097374.2-201ENST00000618617 1306 ntBASIC18.09■□□□□ 0.49
RNF40O75150 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.09■□□□□ 0.49
RNF40O75150 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 SERPINA7P1-201ENST00000443077 631 ntBASIC18.09■□□□□ 0.49
RNF40O75150 MIR3687-2-201ENST00000577708 61 ntBASIC18.09■□□□□ 0.49
RNF40O75150 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.09■□□□□ 0.49
RNF40O75150 MIR3687-1-201ENST00000614492 61 ntBASIC18.09■□□□□ 0.49
RNF40O75150 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.09■□□□□ 0.49
RNF40O75150 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.09■□□□□ 0.49
RNF40O75150 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF40O75150 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
RNF40O75150 AC079776.2-201ENST00000641154 1609 ntBASIC18.09■□□□□ 0.49
RNF40O75150 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.08■□□□□ 0.49
RNF40O75150 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC18.08■□□□□ 0.49
RNF40O75150 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
RNF40O75150 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
RNF40O75150 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RNF40O75150 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.08■□□□□ 0.49
RNF40O75150 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC18.08■□□□□ 0.49
RNF40O75150 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RNF40O75150 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
RNF40O75150 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RNF40O75150 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF40O75150 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.08■□□□□ 0.48
RNF40O75150 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF40O75150 RPS8P6-201ENST00000426177 609 ntBASIC18.08■□□□□ 0.48
RNF40O75150 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RNF40O75150 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.08■□□□□ 0.48
RNF40O75150 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.08■□□□□ 0.48
RNF40O75150 DNAJB3-201ENST00000446806 729 ntBASIC18.08■□□□□ 0.48
RNF40O75150 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.08■□□□□ 0.48
RNF40O75150 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.08■□□□□ 0.48
RNF40O75150 AL139424.1-201ENST00000607572 797 ntBASIC18.08■□□□□ 0.48
RNF40O75150 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.08■□□□□ 0.48
RNF40O75150 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.08■□□□□ 0.48
RNF40O75150 AL022326.1-202ENST00000641533 845 ntBASIC18.08■□□□□ 0.48
RNF40O75150 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RNF40O75150 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF40O75150 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.08■□□□□ 0.48
RNF40O75150 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.08■□□□□ 0.48
RNF40O75150 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF40O75150 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
RNF40O75150 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF40O75150 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.08■□□□□ 0.48
RNF40O75150 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RNF40O75150 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RNF40O75150 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RNF40O75150 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF40O75150 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RNF40O75150 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
RNF40O75150 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF40O75150 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF40O75150 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF40O75150 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF40O75150 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
RNF40O75150 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
RNF40O75150 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.07■□□□□ 0.48
RNF40O75150 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF40O75150 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RNF40O75150 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RNF40O75150 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.07■□□□□ 0.48
RNF40O75150 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RNF40O75150 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RNF40O75150 AC009947.1-201ENST00000444350 727 ntBASIC18.07■□□□□ 0.48
RNF40O75150 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC18.07■□□□□ 0.48
RNF40O75150 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
RNF40O75150 AC112482.1-201ENST00000492080 688 ntBASIC18.07■□□□□ 0.48
RNF40O75150 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF40O75150 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.07■□□□□ 0.48
RNF40O75150 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.07■□□□□ 0.48
RNF40O75150 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
RNF40O75150 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF40O75150 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF40O75150 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.07■□□□□ 0.48
RNF40O75150 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF40O75150 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF40O75150 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF40O75150 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.07■□□□□ 0.48
RNF40O75150 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF40O75150 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF40O75150 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
RNF40O75150 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
RNF40O75150 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
RNF40O75150 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
RNF40O75150 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
RNF40O75150 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF40O75150 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms