Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.67■□□□□ 0.58
MSH4O15457 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.67■□□□□ 0.58
MSH4O15457 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
MSH4O15457 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
MSH4O15457 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
MSH4O15457 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.67■□□□□ 0.58
MSH4O15457 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.67■□□□□ 0.58
MSH4O15457 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.67■□□□□ 0.58
MSH4O15457 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.67■□□□□ 0.58
MSH4O15457 AC005237.2-201ENST00000434368 219 ntBASIC18.67■□□□□ 0.58
MSH4O15457 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
MSH4O15457 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
MSH4O15457 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.67■□□□□ 0.58
MSH4O15457 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.67■□□□□ 0.58
MSH4O15457 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
MSH4O15457 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
MSH4O15457 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
MSH4O15457 KRT8P23-201ENST00000560090 1207 ntBASIC18.67■□□□□ 0.58
MSH4O15457 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.67■□□□□ 0.58
MSH4O15457 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
MSH4O15457 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.67■□□□□ 0.58
MSH4O15457 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
MSH4O15457 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH4O15457 PRORSD1P-202ENST00000563365 2154 ntBASIC18.66■□□□□ 0.58
MSH4O15457 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH4O15457 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH4O15457 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH4O15457 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.66■□□□□ 0.58
MSH4O15457 AC073439.1-201ENST00000624121 1774 ntBASIC18.66■□□□□ 0.58
MSH4O15457 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
MSH4O15457 AC009053.2-201ENST00000563701 2365 ntBASIC18.66■□□□□ 0.58
MSH4O15457 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH4O15457 MIR346-201ENST00000362234 95 ntBASIC18.66■□□□□ 0.58
MSH4O15457 AL139400.1-201ENST00000366220 510 ntBASIC18.66■□□□□ 0.58
MSH4O15457 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH4O15457 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.66■□□□□ 0.58
MSH4O15457 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSH4O15457 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSH4O15457 AC023141.5-201ENST00000458585 616 ntBASIC18.66■□□□□ 0.58
MSH4O15457 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
MSH4O15457 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.66■□□□□ 0.58
MSH4O15457 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.66■□□□□ 0.58
MSH4O15457 IGHV3-62-201ENST00000520057 340 ntBASIC18.66■□□□□ 0.58
MSH4O15457 AP000842.3-202ENST00000569238 1080 ntBASIC18.66■□□□□ 0.58
MSH4O15457 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.66■□□□□ 0.58
MSH4O15457 AC084121.4-201ENST00000641598 221 ntBASIC18.66■□□□□ 0.58
MSH4O15457 AF228730.8-201ENST00000642140 221 ntBASIC18.66■□□□□ 0.58
MSH4O15457 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH4O15457 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
MSH4O15457 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH4O15457 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH4O15457 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
MSH4O15457 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.66■□□□□ 0.58
MSH4O15457 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.66■□□□□ 0.58
MSH4O15457 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSH4O15457 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSH4O15457 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.65■□□□□ 0.58
MSH4O15457 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
MSH4O15457 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.65■□□□□ 0.58
MSH4O15457 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.65■□□□□ 0.58
MSH4O15457 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.65■□□□□ 0.58
MSH4O15457 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.65■□□□□ 0.58
MSH4O15457 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.65■□□□□ 0.58
MSH4O15457 AC073389.1-201ENST00000595595 795 ntBASIC18.65■□□□□ 0.58
MSH4O15457 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.65■□□□□ 0.58
MSH4O15457 AC020765.3-201ENST00000613051 740 ntBASIC18.65■□□□□ 0.58
MSH4O15457 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
MSH4O15457 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.65■□□□□ 0.58
MSH4O15457 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.65■□□□□ 0.58
MSH4O15457 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.65■□□□□ 0.58
MSH4O15457 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSH4O15457 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms