Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
TRIM38O00635 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TRIM38O00635 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM38O00635 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
TRIM38O00635 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM38O00635 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.83■□□□□ 0.29
TRIM38O00635 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
TRIM38O00635 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM38O00635 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.83■□□□□ 0.29
TRIM38O00635 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM38O00635 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
TRIM38O00635 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM38O00635 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM38O00635 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM38O00635 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM38O00635 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM38O00635 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM38O00635 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM38O00635 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
TRIM38O00635 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
TRIM38O00635 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
TRIM38O00635 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.83■□□□□ 0.28
TRIM38O00635 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM38O00635 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM38O00635 ACTG1P14-201ENST00000446382 1122 ntBASIC16.83■□□□□ 0.28
TRIM38O00635 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM38O00635 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM38O00635 CXCL1P1-201ENST00000502804 216 ntBASIC16.83■□□□□ 0.28
TRIM38O00635 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.83■□□□□ 0.28
TRIM38O00635 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM38O00635 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM38O00635 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM38O00635 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.83■□□□□ 0.28
TRIM38O00635 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM38O00635 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
TRIM38O00635 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.83■□□□□ 0.28
TRIM38O00635 AC092902.6-201ENST00000641783 218 ntBASIC16.83■□□□□ 0.28
TRIM38O00635 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM38O00635 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM38O00635 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM38O00635 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
TRIM38O00635 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
TRIM38O00635 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
TRIM38O00635 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM38O00635 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM38O00635 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM38O00635 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TRIM38O00635 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TRIM38O00635 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM38O00635 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM38O00635 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM38O00635 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM38O00635 ACTG1P4-201ENST00000425123 1122 ntBASIC16.82■□□□□ 0.28
TRIM38O00635 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM38O00635 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
TRIM38O00635 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.82■□□□□ 0.28
TRIM38O00635 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
TRIM38O00635 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TRIM38O00635 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.82■□□□□ 0.28
TRIM38O00635 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM38O00635 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.82■□□□□ 0.28
TRIM38O00635 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
TRIM38O00635 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM38O00635 AC093028.1-201ENST00000622998 982 ntBASIC16.82■□□□□ 0.28
TRIM38O00635 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM38O00635 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TRIM38O00635 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM38O00635 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM38O00635 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRIM38O00635 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM38O00635 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM38O00635 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM38O00635 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
TRIM38O00635 LYSMD4-203ENST00000378904 2122 ntBASIC16.81■□□□□ 0.28
TRIM38O00635 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
TRIM38O00635 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM38O00635 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms