Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC31.6■■■□□ 2.65
SHANK3Q9BYB0 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC31.6■■■□□ 2.65
SHANK3Q9BYB0 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
SHANK3Q9BYB0 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SHANK3Q9BYB0 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SHANK3Q9BYB0 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
SHANK3Q9BYB0 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC31.59■■■□□ 2.65
SHANK3Q9BYB0 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC31.59■■■□□ 2.65
SHANK3Q9BYB0 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC31.59■■■□□ 2.65
SHANK3Q9BYB0 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
SHANK3Q9BYB0 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SHANK3Q9BYB0 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
SHANK3Q9BYB0 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
SHANK3Q9BYB0 TSPY9P-201ENST00000440215 945 ntBASIC31.58■■■□□ 2.65
SHANK3Q9BYB0 TSPY11P-201ENST00000442607 1045 ntBASIC31.58■■■□□ 2.65
SHANK3Q9BYB0 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
SHANK3Q9BYB0 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC31.58■■■□□ 2.65
SHANK3Q9BYB0 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SHANK3Q9BYB0 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
SHANK3Q9BYB0 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
SHANK3Q9BYB0 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC31.57■■■□□ 2.64
SHANK3Q9BYB0 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC31.57■■■□□ 2.64
SHANK3Q9BYB0 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC31.57■■■□□ 2.64
SHANK3Q9BYB0 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.57■■■□□ 2.64
SHANK3Q9BYB0 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC31.56■■■□□ 2.64
SHANK3Q9BYB0 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC31.56■■■□□ 2.64
SHANK3Q9BYB0 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
SHANK3Q9BYB0 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
SHANK3Q9BYB0 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC31.56■■■□□ 2.64
SHANK3Q9BYB0 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC31.55■■■□□ 2.64
SHANK3Q9BYB0 AC092028.1-203ENST00000608262 953 ntBASIC31.55■■■□□ 2.64
SHANK3Q9BYB0 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
SHANK3Q9BYB0 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC31.54■■■□□ 2.64
SHANK3Q9BYB0 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC31.53■■■□□ 2.64
SHANK3Q9BYB0 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC31.53■■■□□ 2.64
SHANK3Q9BYB0 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC31.53■■■□□ 2.64
SHANK3Q9BYB0 AC110285.6-201ENST00000617652 491 ntBASIC31.53■■■□□ 2.64
SHANK3Q9BYB0 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
SHANK3Q9BYB0 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SHANK3Q9BYB0 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC31.52■■■□□ 2.64
SHANK3Q9BYB0 QDPR-206ENST00000508623 601 ntTSL 3 BASIC31.52■■■□□ 2.64
SHANK3Q9BYB0 AL512631.2-201ENST00000604634 923 ntBASIC31.52■■■□□ 2.64
SHANK3Q9BYB0 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
SHANK3Q9BYB0 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
SHANK3Q9BYB0 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC31.51■■■□□ 2.63
SHANK3Q9BYB0 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC31.51■■■□□ 2.63
SHANK3Q9BYB0 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
SHANK3Q9BYB0 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
SHANK3Q9BYB0 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
SHANK3Q9BYB0 SRR-208ENST00000576848 588 ntTSL 4 BASIC31.5■■■□□ 2.63
SHANK3Q9BYB0 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
SHANK3Q9BYB0 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
SHANK3Q9BYB0 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC31.49■■■□□ 2.63
SHANK3Q9BYB0 AC011551.1-201ENST00000614101 683 ntBASIC31.49■■■□□ 2.63
SHANK3Q9BYB0 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC31.49■■■□□ 2.63
SHANK3Q9BYB0 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
SHANK3Q9BYB0 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC31.49■■■□□ 2.63
SHANK3Q9BYB0 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC31.48■■■□□ 2.63
SHANK3Q9BYB0 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
SHANK3Q9BYB0 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
SHANK3Q9BYB0 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
SHANK3Q9BYB0 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
SHANK3Q9BYB0 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC31.47■■■□□ 2.63
SHANK3Q9BYB0 MIR4466-201ENST00000606121 54 ntBASIC31.47■■■□□ 2.63
SHANK3Q9BYB0 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC31.47■■■□□ 2.63
SHANK3Q9BYB0 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
SHANK3Q9BYB0 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC31.47■■■□□ 2.63
SHANK3Q9BYB0 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC31.46■■■□□ 2.63
SHANK3Q9BYB0 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
SHANK3Q9BYB0 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
SHANK3Q9BYB0 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
SHANK3Q9BYB0 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC31.45■■■□□ 2.62
SHANK3Q9BYB0 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC31.44■■■□□ 2.62
SHANK3Q9BYB0 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
SHANK3Q9BYB0 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC31.44■■■□□ 2.62
SHANK3Q9BYB0 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
SHANK3Q9BYB0 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
SHANK3Q9BYB0 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SHANK3Q9BYB0 RPP21-222ENST00000433076 577 ntTSL 2 BASIC31.44■■■□□ 2.62
SHANK3Q9BYB0 RALB-208ENST00000631312 311 ntTSL 5 BASIC31.44■■■□□ 2.62
SHANK3Q9BYB0 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC31.44■■■□□ 2.62
SHANK3Q9BYB0 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC31.43■■■□□ 2.62
SHANK3Q9BYB0 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SHANK3Q9BYB0 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
SHANK3Q9BYB0 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC31.43■■■□□ 2.62
SHANK3Q9BYB0 AL136116.3-201ENST00000402907 1138 ntBASIC31.43■■■□□ 2.62
SHANK3Q9BYB0 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC31.43■■■□□ 2.62
SHANK3Q9BYB0 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
SHANK3Q9BYB0 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
SHANK3Q9BYB0 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SHANK3Q9BYB0 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC31.42■■■□□ 2.62
SHANK3Q9BYB0 AL139246.5-201ENST00000606645 996 ntBASIC31.42■■■□□ 2.62
SHANK3Q9BYB0 MIR6724-1-201ENST00000616420 92 ntBASIC31.42■■■□□ 2.62
SHANK3Q9BYB0 MIR6724-2-201ENST00000616483 92 ntBASIC31.42■■■□□ 2.62
SHANK3Q9BYB0 MIR6724-4-201ENST00000617390 92 ntBASIC31.42■■■□□ 2.62
SHANK3Q9BYB0 MIR6724-3-201ENST00000622482 92 ntBASIC31.42■■■□□ 2.62
SHANK3Q9BYB0 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHANK3Q9BYB0 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC31.42■■■□□ 2.62
SHANK3Q9BYB0 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
SHANK3Q9BYB0 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms