Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SSX3Q99909 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SSX3Q99909 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC19.78■□□□□ 0.76
SSX3Q99909 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SSX3Q99909 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.77■□□□□ 0.76
SSX3Q99909 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SSX3Q99909 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SSX3Q99909 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.77■□□□□ 0.76
SSX3Q99909 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SSX3Q99909 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SSX3Q99909 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC19.77■□□□□ 0.76
SSX3Q99909 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SSX3Q99909 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SSX3Q99909 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
SSX3Q99909 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
SSX3Q99909 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SSX3Q99909 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.76■□□□□ 0.75
SSX3Q99909 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SSX3Q99909 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.76■□□□□ 0.75
SSX3Q99909 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SSX3Q99909 AL592293.1-201ENST00000502889 1188 ntBASIC19.76■□□□□ 0.75
SSX3Q99909 AL033527.3-201ENST00000566366 1196 ntBASIC19.76■□□□□ 0.75
SSX3Q99909 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SSX3Q99909 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SSX3Q99909 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SSX3Q99909 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SSX3Q99909 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SSX3Q99909 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SSX3Q99909 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SSX3Q99909 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SSX3Q99909 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SSX3Q99909 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SSX3Q99909 AC091060.1-201ENST00000623524 1766 ntBASIC19.75■□□□□ 0.75
SSX3Q99909 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SSX3Q99909 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SSX3Q99909 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
SSX3Q99909 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SSX3Q99909 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC19.74■□□□□ 0.75
SSX3Q99909 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SSX3Q99909 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SSX3Q99909 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SSX3Q99909 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SSX3Q99909 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SSX3Q99909 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SSX3Q99909 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
SSX3Q99909 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSX3Q99909 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSX3Q99909 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
SSX3Q99909 TSPY13P-201ENST00000338964 914 ntBASIC19.73■□□□□ 0.75
SSX3Q99909 AC004987.1-201ENST00000428627 508 ntBASIC19.73■□□□□ 0.75
SSX3Q99909 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.73■□□□□ 0.75
SSX3Q99909 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SSX3Q99909 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSX3Q99909 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.73■□□□□ 0.75
SSX3Q99909 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSX3Q99909 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSX3Q99909 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SSX3Q99909 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SSX3Q99909 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSX3Q99909 ATP5G2P3-201ENST00000429083 425 ntBASIC19.72■□□□□ 0.75
SSX3Q99909 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SSX3Q99909 RAP2CP1-202ENST00000605179 643 ntBASIC19.71■□□□□ 0.75
SSX3Q99909 AC129492.7-201ENST00000622992 756 ntBASIC19.71■□□□□ 0.75
SSX3Q99909 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSX3Q99909 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSX3Q99909 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSX3Q99909 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSX3Q99909 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.71■□□□□ 0.75
SSX3Q99909 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SSX3Q99909 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSX3Q99909 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.71■□□□□ 0.75
SSX3Q99909 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SSX3Q99909 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SSX3Q99909 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SSX3Q99909 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SSX3Q99909 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SSX3Q99909 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SSX3Q99909 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC19.7■□□□□ 0.74
SSX3Q99909 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
SSX3Q99909 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.7■□□□□ 0.74
SSX3Q99909 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SSX3Q99909 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SSX3Q99909 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.7■□□□□ 0.74
SSX3Q99909 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SSX3Q99909 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SSX3Q99909 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SSX3Q99909 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.7■□□□□ 0.74
SSX3Q99909 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SSX3Q99909 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SSX3Q99909 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SSX3Q99909 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SSX3Q99909 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SSX3Q99909 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SSX3Q99909 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.68■□□□□ 0.74
SSX3Q99909 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
SSX3Q99909 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SSX3Q99909 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SSX3Q99909 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SSX3Q99909 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SSX3Q99909 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms